uk.ac.ebi.intact.application.goDensity.business.binaryInteractions
Class GoGoDensity

java.lang.Object
  |
  +--uk.ac.ebi.intact.application.goDensity.business.binaryInteractions.GoGoDensity

public class GoGoDensity

extends java.lang.Object

GoGoDensity represents a repository for a set of data, which consist of:
- goId1
- goId2
- possible Interactions between and under these two goIds
- existing Interactions between and under these two goIds

Version:

$Id: GoGoDensity.java,v 1.1 2003/09/02 15:08:32 markusbrosch Exp $

Author:

Markus Brosch (markus @ brosch.cc)

Constructor Summary

GoGoDensity(java.lang.String goId1, java.lang.String goId2, int countPossibleInteractions, int countInteractions)
Constructor

Method Summary

int	getCountPossibleIAs()
int	getCoutInteractions()
double	getDensity() The proportion between all possilbe interactions for the two GoIds and the real existing interactions can be expressed as the density.
java.lang.String	getGoId1()
java.lang.String	getGoId2()
static void	main(java.lang.String[] args)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GoGoDensity

public GoGoDensity(java.lang.String goId1,
                   java.lang.String goId2,
                   int countPossibleInteractions,
                   int countInteractions)

Constructor

Parameters:

goId1 - 1st goId for this group

goId2 - 2nd goId

countPossibleInteractions - all possible interactions between the two goIds and all theire children

countInteractions - all real existing interactions in data between the two goIds and all theire children

Method Detail

getGoId1

public java.lang.String getGoId1()

Returns:

goId1 which belongs to this group

getGoId2

public java.lang.String getGoId2()

Returns:

goId2 which belongs to this group

getDensity

public double getDensity()

The proportion between all possilbe interactions for the two GoIds and the real existing interactions can be expressed as the density.

Returns:

density of interactions between goId1 and goId2, depending on the data which was given by the caller.

getCoutInteractions

public int getCoutInteractions()

Returns:

number of real interactions

getCountPossibleIAs

public int getCountPossibleIAs()

Returns:

number of possible interactions

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

See Also:

Object.toString()

main

public static void main(java.lang.String[] args)