All Classes

AbstractEditBean AbstractEditKeyBean AbstractEditorAction AbstractEditorDispatchAction AbstractEditViewBean AbstractIntDisplayWrapper AbstractPredictAction AbstractResulltAction AbstractSequenceManager AbstractViewBean AccessionSimilarityAction Alias AnnotatedObject AnnotatedObjectImpl AnnotatedObjectProxy Annotation AnnotationDispatchAction BaseException BasicGraph BasicGraphI BasicObject BasicObjectImpl BasicObjectProxy BeanStreamReader BinaryDetailsViewBean BinaryResultAction BioSource BioSourceAction BioSourceFactory BioSourceSubmitAction BioSourceViewBean BlastException BusinessConstants CalcBinaryInteractions CalcBinInteractionData CallingSrs CallingSrsIF CancelFormAction ChartBuilder Chrono ChunkedSingleViewBean ClearErrorsTag ClickAction ClickBehaviourAction ClickBehaviourForm Collector ColorAction ColorHighlightmentBehaviour CommentBean Complex Component Config Constants Constants Constants Constants Constants Crc64 CreateException CriteriaBean CvAliasType CvCellCycle CvCellType CvCompartment CvComponentRole CvDagObject CvDatabase CvDevelopmentalStage CvDynaForm CvEvidenceType CvFeatureIdentification CvFeatureType CvGoDag CvGoNode CvIdentification CvInteraction CvInteractionType CvJournal CvModificationType CvObject CvProductRole CvProteinForm CvReferenceQualifier CvTissue CvTopic CvViewBean CvXrefQualifier DagNode DAO DAOFactory DAOSource DatabaseEmptyException DataBuilder DataConversionException DataSourceException DbTools DeleteFormAction DensityImage DensityImageServlet DetailsResultAction DetailsViewBean DispatcherAction DisplayAction DisplayHighlightOptions DisplayHttpContentTag DisplayInteractionNetworkTag DisplaySourceAction DisplaySourceTag DisplayStatisticsBean DocumentationIntegrityChecker DocumentationTag DrawGraph DuplicateLabelException Edge EdgeI Editable EditorActionServlet EditorChoiceAction EditorConstants EditorExceptionHandler EditorMenuFactory EditorService EditorSwitchAction EditorTopicsGenerator EditUser EditUserI EditViewBeanFactory ElementNotParseableException EmptyTopicsException Evidence Experiment ExperimentAction ExperimentBean ExperimentChunkedSingleViewBean ExperimentDispatchAction ExperimentDynaForm ExperimentException ExperimentHoldAction ExperimentSingleViewBean ExperimentSubmitAction ExperimentViewBean FastGoDag Feature FileGenerator FillBioSrcFormAction FillCvFormAction FillExperimentFormAction FillInteractionFormAction FillResultFormAction FilterAction FilterBean FilterForm ForwardConstants FusionableGraph GenerateImage GiotLineBean GoaTools goChildrenAction GoFlatfile2Set GoGoDensity GoHighlightmentSource GoIdNotInDagException goInputAction goInputForm GoServerProxy GoServerProxy.GoIdNotFoundException GoServerProxy.GoResponse GoTokenizer GoTools Graph Graph2FoldedMIF Graph2MIFConsole Graph2MIFWS Graph2MIFWSClient Graph2MIFWSService Graph2MIFWSServlet Graph2UnfoldedMIF GraphFactory GraphHelper GraphI GraphNotConvertableException HeaderSwitchAction Helper HighlightmentAction HighlightmentBehaviour HighlightmentForm HighlightmentSource HighlightProteins HtmlBuilder HtmlBuilderManager HttpProxyManager HttpProxyManager.ProxyConfigurationNotFound ImageBean ImageDimension InitAction InitAction InitFastGoDag InitForm InsertComplex InsertComplexGiot InsertComplexMerck InsertGo InsertGoFromFlatfile Institution IntactActionServlet IntactBaseAction IntactBaseAction IntactBaseAction IntactBaseForm IntactDailyRollingFileAppender IntactException IntactHelper IntactNode IntactObject IntactObjectImpl IntactObjectProxy IntactRowReaderImpl IntactServiceIF IntactServiceImpl IntactSrsException IntactStatistics IntactUser IntactUserI IntactUserI IntactUserIF IntactUserImpl IntDisplayWrapper Interaction InteractionAction InteractionDetailsViewBean InteractionDispatchAction InteractionDynaForm InteractionException InteractionHoldAction InteractionImpl InteractionLinkAction InteractionNetwork InteractionNetworkAction InteractionNetworkForm InteractionProxy InteractionSingleViewBean InteractionSubmitAction InteractionViewBean Interactor InteractorComparator InteractorImpl InteractorProxy IntHoldDisplayWrapper JournalRef Key Key2HashSet KeyNotFoundException LabelValueBean LockManager LoggingInitServlet LoginAction LogoutAction ManagerFiles ManagerFilesBlast ManagerFilesSrs MenuManager MIFSerializeException Modification MultipleResultException MyHashtable NewtServerProxy NewtServerProxy.NewtResponse NewtServerProxy.TaxIdNotFoundException NoDataException Node NodeI NoGraphRetrievedException NoInteractorFoundException NucleicAcid ObjectBridgeDAO ObjectBridgeDAOSource ObjectSearch ObjectSet OptionGenerator OracleSequenceManager PageValueBean Person PostgresSequenceManager PrecalcGoGoDensities PredictActionServlet PredictConstants PredictionAction PredictLogger PredictOra PredictPg PredictService PredictUser PredictUserOra PredictUserPg Product PropertyLoader Protein ProteinBean ProteinCoordinate ProteinCoordinate ProteinDecorator ProteinDetailsViewBean ProteinDispatchAction ProteinExport ProteinFastaDownload ProteinImpl ProteinNotFoundException ProteinProxy ProteinSearchAction ProteinSearchAction ProteinSearchDynaForm ProteinSearchForm ProteinSingleViewBean PsiDataBuilder Range Reference ReferenceQualifier ResetOjbCacheServlet RestoreContextFromCookieTag RestoreErrorsTag ResultAction ResultBean ResultDisplayWrapper RunSimilaritySearch RunSimilaritySearchIF SameGraphPathException SanityChecker SaveContextInCookieTag SaveErrorsTag SearchAction SearchAction SearchConstants SearchException SearchException SearchForm SearchHelper SearchHelperI SearchI SearchReplace SeqIdConstants SequenceChunk SequenceSimilarityAction SequenceSimilarityForm SerializationHelper Serializer SessionExpiredException SessionExpiredException SessionExpiredException SetupGoDensityTables ShortLabelComparator ShortLabelException SidebarDispatchAction SimilarityDecorator SimilarityResultBean SingleResultAction SingleViewBean SmallMolecule SourceAction SourceBean SourceDecorator SrsResultBean StatisticsBean StatisticsDataSet StrutsConstants SubmissionRef SubmitAction SubmitDispatchAction SubmitFormAction TestCaseHelper TransactionException TulipAccess TulipAccess TulipAccessImpl TulipAccessService TulipAccessServiceLocator TulipClient TulipSoapBindingStub TwoMaps UpdateException UpdateProteins UpdateProteinsI UpdateProteinsI.UpdateException Utilities Utilities ValidationException ViewBeanFactory VisibleHighlightmentBehaviour WebServiceManager WelcomeAction WelcomeAction WelcomeForm XmlBuilder XmlDumper XmlLoader Xref XrefDispatchAction XreferenceBean XrefHelper