uk.ac.ebi.intact.application.intSeq.struts.controller
Class SequenceSimilarityAction

java.lang.Object
  |
  +--org.apache.struts.action.Action
        |
        +--uk.ac.ebi.intact.application.intSeq.struts.framework.IntactBaseAction
              |
              +--uk.ac.ebi.intact.application.intSeq.struts.controller.SequenceSimilarityAction

public class SequenceSimilarityAction

extends IntactBaseAction

This action provides the actions required for the Similarity Search page. SequenceSimilarityAction inherits IntactBaseAction, and process the alignment results by one of the inherited methods. This action allows: --to execute an alignment algorithm from the query sequence against the IntAct Database. --to retrieve percentage identity on fragments which match together. The user is forwarded in the Similarity Search results page.

Version:

: $Id: SequenceSimilarityAction.java,v 1.2 2003/07/16 13:56:25 skerrien Exp $

Author:

shuet (shuet@ebi.ac.uk)

Field Summary

Fields inherited from class uk.ac.ebi.intact.application.intSeq.struts.framework.IntactBaseAction

INTACT_ERROR, logger

Fields inherited from class org.apache.struts.action.Action

ACTION_SERVLET_KEY, APPLICATION_KEY, DATA_SOURCE_KEY, defaultLocale, ERROR_KEY, EXCEPTION_KEY, FORM_BEANS_KEY, FORWARDS_KEY, LOCALE_KEY, MAPPING_KEY, MAPPINGS_KEY, MESSAGE_KEY, MESSAGES_KEY, MULTIPART_KEY, PLUG_INS_KEY, REQUEST_PROCESSOR_KEY, servlet, SERVLET_KEY, TRANSACTION_TOKEN_KEY

Constructor Summary

SequenceSimilarityAction()

Method Summary

org.apache.struts.action.ActionForward

execute(org.apache.struts.action.ActionMapping mapping, org.apache.struts.action.ActionForm form, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Execute method with the Struts 1.1 release Process the specified HTTP request, and create the corresponding HTTP response (or forward to another web component that will create it).

Methods inherited from class uk.ac.ebi.intact.application.intSeq.struts.framework.IntactBaseAction

addError, addError, clearErrors, doSimilaritySearch, getProperty, getProperty, getProteinsSrsUrl, getSequenceSrsUrl, getSession, isEmptyError, ManageBlastResult, saveErrors

Methods inherited from class org.apache.struts.action.Action

execute, generateToken, getDataSource, getDataSource, getLocale, getResources, getResources, getResources, getServlet, isCancelled, isTokenValid, isTokenValid, perform, perform, resetToken, saveErrors, saveMessages, saveToken, setLocale, setServlet, toHex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceSimilarityAction

public SequenceSimilarityAction()

Method Detail

execute

public org.apache.struts.action.ActionForward execute(org.apache.struts.action.ActionMapping mapping,
                                                      org.apache.struts.action.ActionForm form,
                                                      javax.servlet.http.HttpServletRequest request,
                                                      javax.servlet.http.HttpServletResponse response)
                                               throws java.io.IOException,
                                                      javax.servlet.ServletException

Execute method with the Struts 1.1 release Process the specified HTTP request, and create the corresponding HTTP response (or forward to another web component that will create it). Return an ActionForward instance describing where and how control should be forwarded, or null if the response has already been completed. (exeptions are included and signaled)

Overrides:

execute in class org.apache.struts.action.Action

Parameters:

mapping - - The ActionMapping used to select this instance

form - - The optional ActionForm bean for this request (if any)

request - - The HTTP request we are processing

response - - The HTTP response we are creating

Returns:

- represents a destination to which the controller servlet, ActionServlet, might be directed to perform a RequestDispatcher.forward() or HttpServletResponse.sendRedirect() to, as a result of processing activities of an Action class

java.io.IOException

javax.servlet.ServletException