uk.ac.ebi.intact.model
Interface Protein

All Superinterfaces:

AnnotatedObject, BasicObject, IntactObject, Interactor

All Known Implementing Classes:

ProteinImpl, ProteinProxy

public interface Protein

extends Interactor

Version:

$Id: Protein.java,v 1.13 2004/01/31 11:31:00 skerrien Exp $

Author:

Samuel Kerrien (skerrien@ebi.ac.uk)

Method Summary

void	addFeature(Feature feature)
void	addModification(Modification modification)
boolean	equals(java.lang.Object o)
java.lang.String	getCrc64()
CvProteinForm	getCvProteinForm()
java.lang.String	getCvProteinFormAc()
java.util.Collection	getFeatures()
Protein	getFormOf()
java.lang.String	getFormOfAc()
java.util.Collection	getModifications()
java.lang.String	getSequence()
int	hashCode()
void	removeFeature(Feature feature)
void	removeModification(Modification modification)
void	setCrc64(java.lang.String crc64)
void	setCvProteinForm(CvProteinForm cvProteinForm)
void	setCvProteinFormAc(java.lang.String cvProteinFormAc)
void	setFeatures(java.util.Collection someFeature)
void	setFormOf(Protein protein)
void	setFormOfAc(java.lang.String ac)
void	setModifications(java.util.Collection someModification)
void	setSequence(IntactHelper helper, java.lang.String aSequence)
void	setSequence(IntactHelper helper, java.lang.String aSequence, java.lang.String crc64)

Methods inherited from interface uk.ac.ebi.intact.model.Interactor

addActiveInstance, addProduct, getActiveInstances, getBioSource, getBioSourceAc, getProducts, removeActiveInstance, removeProduct, setActiveInstances, setBioSource, setBioSourceAc, setProducts, toString

Methods inherited from interface uk.ac.ebi.intact.model.AnnotatedObject

addAlias, addAnnotation, addReference, addXref, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from interface uk.ac.ebi.intact.model.BasicObject

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from interface uk.ac.ebi.intact.model.IntactObject

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Method Detail

getSequence

public java.lang.String getSequence()

setSequence

public void setSequence(IntactHelper helper,
                        java.lang.String aSequence,
                        java.lang.String crc64)
                 throws IntactException

IntactException

setSequence

public void setSequence(IntactHelper helper,
                        java.lang.String aSequence)
                 throws IntactException

IntactException

getCrc64

public java.lang.String getCrc64()

setCrc64

public void setCrc64(java.lang.String crc64)

getFormOf

public Protein getFormOf()

setFormOf

public void setFormOf(Protein protein)

getCvProteinForm

public CvProteinForm getCvProteinForm()

setCvProteinForm

public void setCvProteinForm(CvProteinForm cvProteinForm)

setFeatures

public void setFeatures(java.util.Collection someFeature)

getFeatures

public java.util.Collection getFeatures()

addFeature

public void addFeature(Feature feature)

removeFeature

public void removeFeature(Feature feature)

setModifications

public void setModifications(java.util.Collection someModification)

getModifications

public java.util.Collection getModifications()

addModification

public void addModification(Modification modification)

removeModification

public void removeModification(Modification modification)

getCvProteinFormAc

public java.lang.String getCvProteinFormAc()

setCvProteinFormAc

public void setCvProteinFormAc(java.lang.String cvProteinFormAc)

getFormOfAc

public java.lang.String getFormOfAc()

setFormOfAc

public void setFormOfAc(java.lang.String ac)

equals

public boolean equals(java.lang.Object o)

Specified by:

equals in interface Interactor

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Specified by:

hashCode in interface Interactor

Overrides:

hashCode in class java.lang.Object