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See:
Description
| Interface Summary | |
| AnnotatedObject | |
| BasicObject | |
| Editable | An editiable class must implement this marker interface. |
| IntactObject | |
| Interaction | |
| Interactor | |
| Protein | |
| Class Summary | |
| Alias | An alternative name for the object. |
| AnnotatedObjectImpl | Represents an object with biological annotation. |
| Annotation | Funtional description of an object. |
| BasicObjectImpl | New class which factors out owner and evidences from IntactObject. |
| BioSource | Represents a biological source. |
| Complex | TODO comments |
| Component | The specific instance of an interactor which participates in an interaction. |
| Constants | Basic constants file. |
| CvAliasType | The type of the alias. |
| CvCellCycle | TODO comments |
| CvCellType | TODO comments |
| CvCompartment | The subcellular compartment. |
| CvComponentRole | The role of the specific substrate in the interaction. |
| CvDagObject | Controlled vocabulary class for CVs which are organised in a Directed Acyclic Graph (DAG). |
| CvDatabase | Represents an external database and contains all the information necessary to retrieve an object from it by a given primary identifier. |
| CvDevelopmentalStage | TODO comments |
| CvEvidenceType | TODO comments |
| CvFeatureIdentification | TODO comments |
| CvFeatureType | TODO comments |
| CvGoNode | Controlled vocabulary class for GeneOntology. |
| CvIdentification | The method by which the Interactors have been detected. |
| CvInteraction | he method by which the Interaction has been determined. |
| CvInteractionType | The type of interaction. |
| CvJournal | TODO Represents ... |
| CvModificationType | Represents a type of modification. |
| CvObject | Represents a controlled vocabulary object. |
| CvProductRole | The role of the product. |
| CvProteinForm | TODO comments |
| CvReferenceQualifier | Terms in this controlled vocabulary qualify the association between an AnnotatedObject and a Reference. |
| CvTissue | TODO comments |
| CvTopic | Controlled vocabulary for description topics. |
| CvXrefQualifier | Terms in this controlled vocabulary class qualify the association between AnnotatedObject and Xref. |
| Evidence | TODO comments TODO what to do with this ? |
| Experiment | Represents one experiment. |
| Feature | TODO comments |
| Institution | Represents the contact details for an institution. |
| IntactNode | TODO comments |
| IntactObjectImpl | This is the top level class for all intact model object. |
| InteractionImpl | Represents an interaction. |
| InteractorImpl | Defines a generic interacting object. |
| JournalRef | TODO Represents ... |
| Modification | An amino acid modification. |
| NucleicAcid | A nucleic acid sequence. |
| Person | Represents the contact details of a person. |
| Product | Describes products of an interaction. |
| ProteinImpl | Represents a protein or peptide. |
| Range | TODO comments |
| Reference | TODO COMMENTS |
| ReferenceQualifier | This class qualifies the association between an AnnotatedObject and a Reference. |
| SequenceChunk | Represents a crossreference to another database. |
| SmallMolecule | TODO comments TODO is this going to have anything in it ? |
| SubmissionRef | TODO Represents ... |
| Xref | Represents a crossreference to another database. |
This package is the implementation of the IntAct data model. The IntAct system will be developed in several iterations:
An
overview can be gained from the class diagram:
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