uk.ac.ebi.intact.model
Class InteractorImpl

java.lang.Object
  |
  +--uk.ac.ebi.intact.model.IntactObjectImpl
        |
        +--uk.ac.ebi.intact.model.BasicObjectImpl
              |
              +--uk.ac.ebi.intact.model.AnnotatedObjectImpl
                    |
                    +--uk.ac.ebi.intact.model.InteractorImpl

All Implemented Interfaces:

AnnotatedObject, BasicObject, IntactObject, Interactor, java.io.Serializable

Direct Known Subclasses:

Complex, InteractionImpl, NucleicAcid, ProteinImpl, SmallMolecule

public abstract class InteractorImpl

extends AnnotatedObjectImpl

implements Interactor

Defines a generic interacting object.

Version:

$Id: InteractorImpl.java,v 1.1 2004/01/31 11:31:41 skerrien Exp $

Author:

hhe

See Also:

Serialized Form

Field Summary

Fields inherited from class uk.ac.ebi.intact.model.AnnotatedObjectImpl

annotations, curator, curatorAc, fullName, references, shortLabel, xrefs

Fields inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

ac, NEW_LINE

Constructor Summary

protected	InteractorImpl() no-arg constructor provided for compatibility with subclasses that have no-arg constructors.
protected	InteractorImpl(java.lang.String shortLabel, Institution owner) Constructor for subclass use only.

Method Summary

void	addActiveInstance(Component component)
void	addProduct(Product product)
boolean	equals(java.lang.Object o) Equality for Interactors is currently based on equality for AnnotatedObjects, BioSources and Products.
java.util.Collection	getActiveInstances()
BioSource	getBioSource()
java.lang.String	getBioSourceAc()
java.util.Collection	getProducts()
int	hashCode() This class overwrites equals.
void	removeActiveInstance(Component component)
void	removeProduct(Product product)
void	setActiveInstances(java.util.Collection someActiveInstance)
void	setBioSource(BioSource bioSource)
void	setBioSourceAc(java.lang.String bioSourceAc)
void	setProducts(java.util.Collection someProduct)
java.lang.String	toString()

Methods inherited from class uk.ac.ebi.intact.model.AnnotatedObjectImpl

addAlias, addAnnotation, addReference, addXref, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from class uk.ac.ebi.intact.model.BasicObjectImpl

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.intact.model.AnnotatedObject

addAlias, addAnnotation, addReference, addXref, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from interface uk.ac.ebi.intact.model.BasicObject

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from interface uk.ac.ebi.intact.model.IntactObject

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Constructor Detail

InteractorImpl

protected InteractorImpl()

no-arg constructor provided for compatibility with subclasses that have no-arg constructors.

InteractorImpl

protected InteractorImpl(java.lang.String shortLabel,
                         Institution owner)

Constructor for subclass use only. Ensures that Interactors cannot be created without at least a shortLabel and an owner specified. NOTE: It is assumed that subclasses of Interactor will supply a valid BioSource; this is initially set to null but other classes may expect it to be non-null.

Parameters:

shortLabel - The memorable label to identify this Interactor

owner - The Institution which owns this Interactor

Throws:

java.lang.NullPointerException - thrown if either parameters are not specified

Method Detail

getBioSource

public BioSource getBioSource()

Specified by:

getBioSource in interface Interactor

setBioSource

public void setBioSource(BioSource bioSource)

Specified by:

setBioSource in interface Interactor

setActiveInstances

public void setActiveInstances(java.util.Collection someActiveInstance)

Specified by:

setActiveInstances in interface Interactor

getActiveInstances

public java.util.Collection getActiveInstances()

Specified by:

getActiveInstances in interface Interactor

addActiveInstance

public void addActiveInstance(Component component)

Specified by:

addActiveInstance in interface Interactor

removeActiveInstance

public void removeActiveInstance(Component component)

Specified by:

removeActiveInstance in interface Interactor

setProducts

public void setProducts(java.util.Collection someProduct)

Specified by:

setProducts in interface Interactor

getProducts

public java.util.Collection getProducts()

Specified by:

getProducts in interface Interactor

addProduct

public void addProduct(Product product)

Specified by:

addProduct in interface Interactor

removeProduct

public void removeProduct(Product product)

Specified by:

removeProduct in interface Interactor

getBioSourceAc

public java.lang.String getBioSourceAc()

Specified by:

getBioSourceAc in interface Interactor

setBioSourceAc

public void setBioSourceAc(java.lang.String bioSourceAc)

Specified by:

setBioSourceAc in interface Interactor

toString

public java.lang.String toString()

Specified by:

toString in interface Interactor

Overrides:

toString in class AnnotatedObjectImpl

equals

public boolean equals(java.lang.Object o)

Equality for Interactors is currently based on equality for AnnotatedObjects, BioSources and Products.

Specified by:

equals in interface Interactor

Overrides:

equals in class AnnotatedObjectImpl

Parameters:

o - The object to check

Returns:

true if the parameter equlas this object, false otherwise

See Also:

AnnotatedObject

hashCode

public int hashCode()

Description copied from class: AnnotatedObjectImpl

This class overwrites equals. To ensure proper functioning of HashTable, hashCode must be overwritten, too.

Specified by:

hashCode in interface Interactor

Overrides:

hashCode in class AnnotatedObjectImpl

Returns:

hash code of the object.