uk.ac.ebi.intact.model
Class Xref

java.lang.Object
  |
  +--uk.ac.ebi.intact.model.IntactObjectImpl
        |
        +--uk.ac.ebi.intact.model.BasicObjectImpl
              |
              +--uk.ac.ebi.intact.model.Xref

All Implemented Interfaces:

BasicObject, IntactObject, java.io.Serializable

public class Xref

extends BasicObjectImpl

Represents a crossreference to another database.

Version:

$Id: Xref.java,v 1.12 2004/01/31 11:33:13 skerrien Exp $

Author:

hhe

See Also:

Serialized Form

Field Summary

protected java.lang.String	cvDatabaseAc
protected java.lang.String	cvXrefQualifierAc

Fields inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

ac, NEW_LINE

Constructor Summary

Xref(Institution anOwner, CvDatabase aDatabase, java.lang.String aPrimaryId, java.lang.String aSecondaryId, java.lang.String aDatabaseRelease, CvXrefQualifier aCvXrefQualifier)
Creates a valid Xref instance.

Method Summary

boolean	equals(java.lang.Object o) Equality for Xrefs is currently based on equality for CvDatabases and primaryIds.
CvDatabase	getCvDatabase()
java.lang.String	getCvDatabaseAc()
CvXrefQualifier	getCvXrefQualifier()
java.lang.String	getCvXrefQualifierAc()
java.lang.String	getDbRelease()
java.lang.String	getParentAc()
java.lang.String	getPrimaryId()
java.lang.String	getSecondaryId()
int	hashCode() This class overwrites equals.
void	setCvDatabase(CvDatabase cvDatabase)
void	setCvDatabaseAc(java.lang.String ac)
void	setCvXrefQualifier(CvXrefQualifier cvXrefQualifier)
void	setCvXrefQualifierAc(java.lang.String ac)
void	setDbRelease(java.lang.String dbRelease)
void	setParentAc(java.lang.String parentAc)
void	setPrimaryId(java.lang.String primaryId)
void	setSecondaryId(java.lang.String secondaryId)
java.lang.String	toString()

Methods inherited from class uk.ac.ebi.intact.model.BasicObjectImpl

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.intact.model.IntactObject

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Field Detail

cvXrefQualifierAc

protected java.lang.String cvXrefQualifierAc

cvDatabaseAc

protected java.lang.String cvDatabaseAc

Constructor Detail

Xref

public Xref(Institution anOwner,
            CvDatabase aDatabase,
            java.lang.String aPrimaryId,
            java.lang.String aSecondaryId,
            java.lang.String aDatabaseRelease,
            CvXrefQualifier aCvXrefQualifier)

Creates a valid Xref instance. Items which must be defined are:

• an owner (Institution)
• database details (controlled vocabulary instance)
• a Primary ID
Parameters:
anOwner - Owner of the cross-reference (non-null)
aDatabase - Controlled vocabulary instance defining the database details (non-null)
aPrimaryId - primary identifier for the cross-reference (non-null), this should be 30 characters maximum if it's more it will be truncated. if not done, Oracle would throw an error.
aSecondaryId - secondary identifier (eg a domain name), this should be 30 characters maximum if it's more it will be truncated. if not done, Oracle would throw an error.
aDatabaseRelease - database version
aCvXrefQualifier - controlled vocabulary for any qualifiers (may be null)
Throws:
java.lang.NullPointerException - thrown if any mandatory parameters are not specified

Method Detail

getPrimaryId

public java.lang.String getPrimaryId()

setPrimaryId

public void setPrimaryId(java.lang.String primaryId)

getSecondaryId

public java.lang.String getSecondaryId()

setSecondaryId

public void setSecondaryId(java.lang.String secondaryId)

getDbRelease

public java.lang.String getDbRelease()

setDbRelease

public void setDbRelease(java.lang.String dbRelease)

getParentAc

public java.lang.String getParentAc()

setParentAc

public void setParentAc(java.lang.String parentAc)

getCvXrefQualifier

public CvXrefQualifier getCvXrefQualifier()

setCvXrefQualifier

public void setCvXrefQualifier(CvXrefQualifier cvXrefQualifier)

getCvDatabase

public CvDatabase getCvDatabase()

setCvDatabase

public void setCvDatabase(CvDatabase cvDatabase)

getCvXrefQualifierAc

public java.lang.String getCvXrefQualifierAc()

setCvXrefQualifierAc

public void setCvXrefQualifierAc(java.lang.String ac)

getCvDatabaseAc

public java.lang.String getCvDatabaseAc()

setCvDatabaseAc

public void setCvDatabaseAc(java.lang.String ac)

equals

public boolean equals(java.lang.Object o)

Equality for Xrefs is currently based on equality for CvDatabases and primaryIds.

Overrides:

equals in class java.lang.Object

Parameters:

o - The object to check

Returns:

true if the parameter equals this object, false otherwise

See Also:

CvDatabase

hashCode

public int hashCode()

This class overwrites equals. To ensure proper functioning of HashTable, hashCode must be overwritten, too.

Overrides:

hashCode in class java.lang.Object

Returns:

hash code of the object.

toString

public java.lang.String toString()

Specified by:

toString in interface BasicObject

Overrides:

toString in class BasicObjectImpl