uk.ac.ebi.intact.model
Class CvGoNode

java.lang.Object
  |
  +--uk.ac.ebi.intact.model.IntactObjectImpl
        |
        +--uk.ac.ebi.intact.model.BasicObjectImpl
              |
              +--uk.ac.ebi.intact.model.AnnotatedObjectImpl
                    |
                    +--uk.ac.ebi.intact.model.CvObject
                          |
                          +--uk.ac.ebi.intact.model.CvDagObject
                                |
                                +--uk.ac.ebi.intact.model.CvGoNode

All Implemented Interfaces:

AnnotatedObject, BasicObject, IntactObject, java.io.Serializable

public class CvGoNode

extends CvDagObject

Controlled vocabulary class for GeneOntology. CVs which are organised in a Directed Acyclic (DAG). Each node can have many multiple parents and multiple children. Each node represents one specific GO ID (cv) in the GO hierarchy.
Before this class can be used, GoTools.insertGoDag(CvGoNode.class, GoDagFlatfile) must be executet.

Version:

$Id: CvGoNode.java,v 1.5 2004/01/31 11:34:16 skerrien Exp $

Author:

Markus Brosch (markus @ brosch.cc)

See Also:

Serialized Form

Field Summary

Fields inherited from class uk.ac.ebi.intact.model.AnnotatedObjectImpl

annotations, curator, curatorAc, fullName, references, shortLabel, xrefs

Fields inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

ac, NEW_LINE

Constructor Summary

CvGoNode()
This constructor should be replaced as it could result in objects with invalid state.

Method Summary

java.util.Collection	getAllChilds() This CvGoNode can have children - the equivalent method is implemented in the super class CvDagObject by "getChilds" method This method should provide ALL children (subchildren) of the node, that means also the children of the children of the children etc.
java.lang.String	getGoId()
java.util.Collection	getInteractors(IntactHelper helper)
java.lang.String	toString()

Methods inherited from class uk.ac.ebi.intact.model.CvDagObject

addChild, addParent, ancestors, getChildren, getParents, getRoot, removeChild, removeParent, toGoDag, toGoDag

Methods inherited from class uk.ac.ebi.intact.model.AnnotatedObjectImpl

addAlias, addAnnotation, addReference, addXref, equals, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, hashCode, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from class uk.ac.ebi.intact.model.BasicObjectImpl

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from class uk.ac.ebi.intact.model.IntactObjectImpl

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.intact.model.BasicObject

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from interface uk.ac.ebi.intact.model.IntactObject

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Constructor Detail

CvGoNode

public CvGoNode()

This constructor should be replaced as it could result in objects with invalid state. It is here for object mapping purposes only and if possible will be made private.

Method Detail

getGoId

public java.lang.String getGoId()

Returns:

The GO id, which belongs to this unique CvGoNode Object

getAllChilds

public java.util.Collection getAllChilds()

This CvGoNode can have children - the equivalent method is implemented in the super class CvDagObject by "getChilds" method
This method should provide ALL children (subchildren) of the node,
that means also the children of the children of the children etc.

Returns:

all possible children of this node as a Collection of CvGoNodes

getInteractors

public java.util.Collection getInteractors(IntactHelper helper)
                                    throws IntactException

Returns:

Collection of Interactors, which were associated with this GO term / id

IntactException

toString

public java.lang.String toString()

Specified by:

toString in interface AnnotatedObject

Overrides:

toString in class AnnotatedObjectImpl

Returns:

String represention of this node