uk.ac.ebi.intact.model.proxy
Class ProteinProxy

java.lang.Object
  |
  +--org.apache.ojb.broker.VirtualProxy
        |
        +--uk.ac.ebi.intact.model.proxy.IntactObjectProxy
              |
              +--uk.ac.ebi.intact.model.proxy.BasicObjectProxy
                    |
                    +--uk.ac.ebi.intact.model.proxy.AnnotatedObjectProxy
                          |
                          +--uk.ac.ebi.intact.model.proxy.InteractorProxy
                                |
                                +--uk.ac.ebi.intact.model.proxy.ProteinProxy

All Implemented Interfaces:

AnnotatedObject, BasicObject, IntactObject, Interactor, Protein, java.io.Serializable

public class ProteinProxy

extends InteractorProxy

implements Protein

Version:

$Id: ProteinProxy.java,v 1.2 2004/02/10 15:07:16 skerrien Exp $

Author:

Samuel Kerrien (skerrien@ebi.ac.uk)

See Also:

Serialized Form

Constructor Summary

ProteinProxy()

ProteinProxy(java.lang.reflect.InvocationHandler handler)

ProteinProxy(org.apache.ojb.broker.PBKey key, org.apache.ojb.broker.Identity uniqueId)

Method Summary

void	addFeature(Feature feature)
void	addModification(Modification modification)
boolean	equals(java.lang.Object o)
java.lang.String	getCrc64()
CvProteinForm	getCvProteinForm()
java.lang.String	getCvProteinFormAc()
java.util.Collection	getFeatures()
Protein	getFormOf()
java.lang.String	getFormOfAc()
java.util.Collection	getModifications()
java.lang.String	getSequence() Implements Protein's methods
int	hashCode()
void	removeFeature(Feature feature)
void	removeModification(Modification modification)
void	setCrc64(java.lang.String crc64)
void	setCvProteinForm(CvProteinForm cvProteinForm)
void	setCvProteinFormAc(java.lang.String cvProteinFormAc)
void	setFeatures(java.util.Collection someFeature)
void	setFormOf(Protein protein)
void	setFormOfAc(java.lang.String ac)
void	setModifications(java.util.Collection someModification)
void	setSequence(IntactHelper helper, java.lang.String aSequence)
void	setSequence(IntactHelper helper, java.lang.String aSequence, java.lang.String crc64)

Methods inherited from class uk.ac.ebi.intact.model.proxy.InteractorProxy

addActiveInstance, addProduct, getActiveInstances, getBioSource, getBioSourceAc, getProducts, removeActiveInstance, removeProduct, setActiveInstances, setBioSource, setBioSourceAc, setProducts

Methods inherited from class uk.ac.ebi.intact.model.proxy.AnnotatedObjectProxy

addAlias, addAnnotation, addReference, addXref, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from class uk.ac.ebi.intact.model.proxy.BasicObjectProxy

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from class uk.ac.ebi.intact.model.proxy.IntactObjectProxy

getAc, getCreated, getRealClassName, getUpdated, setAc, setCreated, setUpdated, toString

Methods inherited from class org.apache.ojb.broker.VirtualProxy

alreadyMaterialized, createProxy, getIndirectionHandler, getRealSubject

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.intact.model.Interactor

addActiveInstance, addProduct, getActiveInstances, getBioSource, getBioSourceAc, getProducts, removeActiveInstance, removeProduct, setActiveInstances, setBioSource, setBioSourceAc, setProducts, toString

Methods inherited from interface uk.ac.ebi.intact.model.AnnotatedObject

addAlias, addAnnotation, addReference, addXref, getAliases, getAnnotations, getCurator, getCuratorAc, getFullName, getReferences, getShortLabel, getXrefs, removeAlias, removeAnnotation, removeReference, removeXref, setAliases, setAnnotation, setCurator, setCuratorAc, setFullName, setReferences, setShortLabel, setXrefs, update, updateUniqueAnnotation

Methods inherited from interface uk.ac.ebi.intact.model.BasicObject

addEvidence, getEvidences, getOwner, getOwnerAc, removeEvidence, setEvidences, setOwner, setOwnerAc

Methods inherited from interface uk.ac.ebi.intact.model.IntactObject

getAc, getCreated, getUpdated, setAc, setCreated, setUpdated

Constructor Detail

ProteinProxy

public ProteinProxy()

ProteinProxy

public ProteinProxy(org.apache.ojb.broker.PBKey key,
                    org.apache.ojb.broker.Identity uniqueId)

Parameters:

uniqueId - org.apache.ojb.broker.Identity

ProteinProxy

public ProteinProxy(java.lang.reflect.InvocationHandler handler)

Method Detail

getSequence

public java.lang.String getSequence()

Implements Protein's methods

Specified by:

getSequence in interface Protein

setSequence

public void setSequence(IntactHelper helper,
                        java.lang.String aSequence,
                        java.lang.String crc64)
                 throws IntactException

Specified by:

setSequence in interface Protein

IntactException

setSequence

public void setSequence(IntactHelper helper,
                        java.lang.String aSequence)
                 throws IntactException

Specified by:

setSequence in interface Protein

IntactException

getCrc64

public java.lang.String getCrc64()

Specified by:

getCrc64 in interface Protein

setCrc64

public void setCrc64(java.lang.String crc64)

Specified by:

setCrc64 in interface Protein

getFormOf

public Protein getFormOf()

Specified by:

getFormOf in interface Protein

setFormOf

public void setFormOf(Protein protein)

Specified by:

setFormOf in interface Protein

getCvProteinForm

public CvProteinForm getCvProteinForm()

Specified by:

getCvProteinForm in interface Protein

setCvProteinForm

public void setCvProteinForm(CvProteinForm cvProteinForm)

Specified by:

setCvProteinForm in interface Protein

setFeatures

public void setFeatures(java.util.Collection someFeature)

Specified by:

setFeatures in interface Protein

getFeatures

public java.util.Collection getFeatures()

Specified by:

getFeatures in interface Protein

addFeature

public void addFeature(Feature feature)

Specified by:

addFeature in interface Protein

removeFeature

public void removeFeature(Feature feature)

Specified by:

removeFeature in interface Protein

setModifications

public void setModifications(java.util.Collection someModification)

Specified by:

setModifications in interface Protein

getModifications

public java.util.Collection getModifications()

Specified by:

getModifications in interface Protein

addModification

public void addModification(Modification modification)

Specified by:

addModification in interface Protein

removeModification

public void removeModification(Modification modification)

Specified by:

removeModification in interface Protein

getCvProteinFormAc

public java.lang.String getCvProteinFormAc()

Specified by:

getCvProteinFormAc in interface Protein

setCvProteinFormAc

public void setCvProteinFormAc(java.lang.String cvProteinFormAc)

Specified by:

setCvProteinFormAc in interface Protein

getFormOfAc

public java.lang.String getFormOfAc()

Specified by:

getFormOfAc in interface Protein

setFormOfAc

public void setFormOfAc(java.lang.String ac)

Specified by:

setFormOfAc in interface Protein

equals

public boolean equals(java.lang.Object o)

Specified by:

equals in interface Protein

Overrides:

equals in class InteractorProxy

hashCode

public int hashCode()

Specified by:

hashCode in interface Protein

Overrides:

hashCode in class InteractorProxy