uk.ac.ebi.intact.application.intSeq.business
Interface CallingSrsIF

All Known Implementing Classes:

CallingSrs

public interface CallingSrsIF

Interface which provides methods specific to a user request, to return SRS results from this query.

Version:

: $Id: CallingSrsIF.java,v 1.2 2003/07/16 13:56:24 skerrien Exp $

Author:

shuet (shuet@ebi.ac.uk)

Method Summary

boolean	GetBooleanIntactId() check if the protein topic still corresponds to an Intact entry.
java.lang.String	GetSequenceFasta() return the sequence, which allows to run a multi-alignment algorithm (like Fasta or Blast).
java.util.ArrayList	RetrieveAccDes() request result: return a list of accession numbers and its own description.

Method Detail

GetBooleanIntactId

public boolean GetBooleanIntactId()
                           throws IntactException

check if the protein topic still corresponds to an Intact entry.

Returns:

the boolean answer.

IntactException

RetrieveAccDes

public java.util.ArrayList RetrieveAccDes()
                                   throws IntactException

request result: return a list of accession numbers and its own description.

Returns:

arraylist of arraylist (size 2).

IntactException

GetSequenceFasta

public java.lang.String GetSequenceFasta()
                                  throws IntactException

return the sequence, which allows to run a multi-alignment algorithm (like Fasta or Blast).

Returns:

string sequence in the Fasta format.

IntactException