uk.ac.ebi.intact.application.intSeq.business
Interface RunSimilaritySearchIF

All Known Implementing Classes:

RunSimilaritySearch

public interface RunSimilaritySearchIF

Interface which provides methods specific to check if the multiple alignment command has been well executed, and to retrieve the result list, made of arrays with: * the accession number * the percentage identity * the start of the query fragment * the start of the subject fragment * the end of the query fragment * the end of the subject fragment

Version:

: $Id: RunSimilaritySearchIF.java,v 1.2 2003/07/16 13:56:25 skerrien Exp $

Author:

shuet (shuet@ebi.ac.uk)

Method Summary

boolean	GetCommandExecResponse() keep inform the action whether the command line was executed well or not.
java.util.ArrayList	RetrieveParseResult() return the file which contains all Blast results from the user's request.

Method Detail

GetCommandExecResponse

public boolean GetCommandExecResponse()

keep inform the action whether the command line was executed well or not.

Returns:

the boolean answer.

RetrieveParseResult

public java.util.ArrayList RetrieveParseResult()
                                        throws IntactException

return the file which contains all Blast results from the user's request.

Returns:

the results in a list of list.

IntactException