Package uk.ac.ebi.intact.application.intSeq.business

The classes implementing the business logic of the IntSeq application are in this package.

See:
Description

Interface Summary

CallingSrsIF	Interface which provides methods specific to a user request, to return SRS results from this query.
RunSimilaritySearchIF	Interface which provides methods specific to check if the multiple alignment command has been well executed, and to retrieve the result list, made of arrays with: * the accession number * the percentage identity * the start of the query fragment * the start of the subject fragment * the end of the query fragment * the end of the subject fragment

Class Summary

CallingSrs	This class allows to retrieve AC and Description fields from the SRS engine, with the SPTr database.
Constants
ManagerFiles	This class is a base class which allows to manage the file operations like opening, reading, writing, parsing, deleting.
ManagerFilesBlast	This class inherits the ManagerFiles class.
ManagerFilesSrs	This class inherits the ManagerFiles class.
RunSimilaritySearch	This class manages the multiple alignment algorithm command line, defined in the web.xml file (it can be wu-blast, ncbi-blast or fasta).

Package uk.ac.ebi.intact.application.intSeq.business Description

The classes implementing the business logic of the IntSeq application are in this package. by Sophie Huet, shuet@ebi.ac.uk