uk.ac.ebi.intact.util
Class SanityChecker

java.lang.Object
  |
  +--uk.ac.ebi.intact.util.SanityChecker

public class SanityChecker

extends java.lang.Object

Utility class to perform some sanity checks on the DB. Mainly for use by curators. A report of anomolies detected (as per the list of checks) is sent via email to the appropriate people.

Version:

$Id: SanityChecker.java,v 1.9 2004/03/26 14:33:22 skerrien Exp $

Author:

Chris Lewington

Constructor Summary

SanityChecker(IntactHelper helper, java.io.PrintWriter writer)

Method Summary

void	checkExperiments() Performs checks on Experiments.
void	checkExperimentsPubmedIds() Performs checks on Experiments.
void	checkInteractions() Performs Interaction checks.
void	checkInteractionsBaitAndPrey() Performs Interaction checks.
void	checkProteins() Performs checks against Proteins.
void	cleanUp() tidies up the DB statements.
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SanityChecker

public SanityChecker(IntactHelper helper,
                     java.io.PrintWriter writer)
              throws IntactException,
                     java.sql.SQLException

Method Detail

checkExperiments

public void checkExperiments()
                      throws IntactException,
                             java.sql.SQLException

Performs checks on Experiments.

Throws:

IntactException - Thrown if there was a Helper problem

java.sql.SQLException - Thrown if there was a DB access problem

checkExperimentsPubmedIds

public void checkExperimentsPubmedIds()
                               throws IntactException,
                                      java.sql.SQLException

Performs checks on Experiments.

Throws:

IntactException - Thrown if there was a Helper problem

java.sql.SQLException - Thrown if there was a DB access problem

checkInteractions

public void checkInteractions()
                       throws IntactException,
                              java.sql.SQLException

Performs Interaction checks.

Throws:

IntactException - thrown if there was a search problem

java.sql.SQLException

checkInteractionsBaitAndPrey

public void checkInteractionsBaitAndPrey()
                                  throws IntactException,
                                         java.sql.SQLException

Performs Interaction checks.

Throws:

IntactException - thrown if there was a search problem

java.sql.SQLException

checkProteins

public void checkProteins()
                   throws IntactException,
                          java.sql.SQLException

Performs checks against Proteins.

Throws:

IntactException - Thrown if there were Helper problems

java.sql.SQLException - thrown if there were DB access problems

cleanUp

public void cleanUp()

tidies up the DB statements.

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

java.lang.Exception