uk.ac.ebi.intact.simpleGraph
Class Graph

java.lang.Object
  |
  +--java.util.AbstractMap
        |
        +--java.util.HashMap
              |
              +--uk.ac.ebi.intact.simpleGraph.BasicGraph
                    |
                    +--uk.ac.ebi.intact.simpleGraph.Graph

All Implemented Interfaces:

BasicGraphI, java.lang.Cloneable, GraphI, java.util.Map, java.io.Serializable

Direct Known Subclasses:

FusionableGraph, InteractionNetwork

public class Graph

extends BasicGraph

implements GraphI

A simple graph class for temporary processing, for example to prepare output for graph analysis packages.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class java.util.Map

java.util.Map.Entry

Constructor Summary

Graph()

Method Summary

void	addEdge(EdgeI anEdge)
Node	addNode(Interactor anInteractor)
void	addNode(NodeI aNode)
void	addVisited(BasicObject anElement) record that a Component has been visited during graph exploration.
java.util.Collection	getEdges()
java.util.HashMap	getNodes()
boolean	isVisited(BasicObject anElement) return true if a Component has been visited during graph exploration.
java.lang.String	toString()

Methods inherited from class uk.ac.ebi.intact.simpleGraph.BasicGraph

getId, getLabel, setId, setLabel

Methods inherited from class java.util.HashMap

clear, clone, containsKey, containsValue, entrySet, get, isEmpty, keySet, put, putAll, remove, size, values

Methods inherited from class java.util.AbstractMap

equals, hashCode

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.intact.simpleGraph.BasicGraphI

getId, getLabel, setId, setLabel

Methods inherited from interface java.util.Map

clear, containsKey, containsValue, entrySet, equals, get, hashCode, isEmpty, keySet, put, putAll, remove, size, values

Constructor Detail

Graph

public Graph()

Method Detail

addNode

public void addNode(NodeI aNode)

Specified by:

addNode in interface GraphI

addNode

public Node addNode(Interactor anInteractor)

Specified by:

addNode in interface GraphI

addEdge

public void addEdge(EdgeI anEdge)

Specified by:

addEdge in interface GraphI

getNodes

public java.util.HashMap getNodes()

Specified by:

getNodes in interface GraphI

getEdges

public java.util.Collection getEdges()

Specified by:

getEdges in interface GraphI

addVisited

public void addVisited(BasicObject anElement)

record that a Component has been visited during graph exploration.

Specified by:

addVisited in interface GraphI

isVisited

public boolean isVisited(BasicObject anElement)

return true if a Component has been visited during graph exploration.

Specified by:

isVisited in interface GraphI

toString

public java.lang.String toString()

Overrides:

toString in class java.util.AbstractMap