uk.ac.ebi.intact.application.graph2MIF
Class GraphFactory

java.lang.Object
  |
  +--uk.ac.ebi.intact.application.graph2MIF.GraphFactory

public class GraphFactory

extends java.lang.Object

Graph producer.

Version:

$Id: GraphFactory.java,v 1.1 2003/10/30 15:47:55 skerrien Exp $

Author:

Samuel Kerrien (skerrien@ebi.ac.uk)

Constructor Summary

GraphFactory()

Method Summary

static Graph

getGraph(java.lang.String queryString, java.lang.Integer depth) getInteractionNetwork retrieves a interactionnetwork (graph) from a given queryString and depth.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GraphFactory

public GraphFactory()

Method Detail

getGraph

public static Graph getGraph(java.lang.String queryString,
                             java.lang.Integer depth)
                      throws IntactException,
                             NoInteractorFoundException,
                             NoGraphRetrievedException

getInteractionNetwork retrieves a interactionnetwork (graph) from a given queryString and depth. THe queryString can be a comma-separated list of Interactor's AC.

Parameters:

queryString - String queryString in IntAct

depth - Integer of the depth the graph should be expanded

Returns:

graph of the queryString with given depth

Throws:

IntactException - thrown if search for interactor failed

NoGraphRetrievedException - thrown if DOM-Object could not be serialized

NoInteractorFoundException - thrown if no Interactor found for queryString