uk.ac.ebi.intact.application.goDensity.business.data
Class GoFlatfile2Set

java.lang.Object
  |
  +--uk.ac.ebi.intact.application.goDensity.business.data.GoFlatfile2Set

public class GoFlatfile2Set

extends java.lang.Object

GoFlatfile2Set can be used to parse a GO flatfile

Version:

$Id: GoFlatfile2Set.java,v 1.1 2003/09/02 15:08:32 markusbrosch Exp $

Author:

Markus Brosch (markus @ brosch.cc)

Constructor Summary

GoFlatfile2Set()

Method Summary

static java.util.Set

goFlatfile2Set(java.lang.String sourceFile) used to parse a GO flatfile and returns all GO:IDs as Strings in a Set.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GoFlatfile2Set

public GoFlatfile2Set()

Method Detail

goFlatfile2Set

public static java.util.Set goFlatfile2Set(java.lang.String sourceFile)
                                    throws java.io.IOException

used to parse a GO flatfile and returns all GO:IDs as Strings in a Set.

Parameters:

sourceFile - of the GO flatfile (e.g. data/GoSlim.ontology). Only the first GO:ID within one line is included in the Set!

Returns:

a Set of all GO:IDs as Strings

Throws:

java.io.IOException