Constant Field Values

Contents

• uk.ac.*

uk.ac.*

uk.ac.ebi.intact.application.commons.struts.taglibs.DocumentationTag

public static final int	ERROR	4
public static final int	INFORMATIONAL	1
public static final int	REDIRECTION	3
public static final int	SERVER_ERROR	5
public static final java.lang.String	SESSION_KEY	"INTACT_DOCUMENTATION_PRESENT_TESTED"
public static final int	SUCCESSFUL	2

uk.ac.ebi.intact.application.dataConversion.FileGenerator

public static final int	LARGESCALESIZE	2500
public static final int	SMALLSCALELIMIT	500

uk.ac.ebi.intact.application.editor.struts.framework.AbstractEditorAction

public static final java.lang.String

EDITOR_ERROR

"EditError"

uk.ac.ebi.intact.application.editor.struts.framework.util.EditorMenuFactory

public static final java.lang.String	CELLS	"Cells"
public static final java.lang.String	DATABASES	"DatabaseNames"
public static final java.lang.String	EXPERIMENTS	"Experiments"
public static final java.lang.String	IDENTIFICATIONS	"Identifications"
public static final java.lang.String	INTERACTION_TYPES	"InteractionTypes"
public static final java.lang.String	INTERACTIONS	"Interactions"
public static final java.lang.String	ORGANISMS	"Organisms"
public static final java.lang.String	QUALIFIERS	"QualifierNames"
public static final java.lang.String	ROLES	"Roles"
public static final java.lang.String	SELECT_LIST_ITEM	"--- Select ---"
public static final java.lang.String	TISSUES	"Tissues"
public static final java.lang.String	TOPICS	"TopicNames"

uk.ac.ebi.intact.application.editor.struts.view.AbstractEditBean

public static final java.lang.String	SAVE	"saving"
public static final java.lang.String	VIEW	"editing"

uk.ac.ebi.intact.application.editor.struts.view.interaction.ProteinBean

public static final java.lang.String

ERROR

"error"

uk.ac.ebi.intact.application.goDensity.setupGoDensity.Config

public static final int	BIgOFFSET	160
public static final java.lang.String	DB	"ORACLE"
public static final int	IMAGeSIZE	600
public static final int	SMALlOFFSET	20
public static final boolean	USeONLyPRECALCULATIOnDATA	1

uk.ac.ebi.intact.application.hierarchView.business.Constants

public static final java.lang.String	ATTRIBUTE_COLOR_LABEL	"colorLabel"
public static final java.lang.String	ATTRIBUTE_COLOR_NODE	"colorNode"
public static final java.lang.String	ATTRIBUTE_COORDINATE_X	"x"
public static final java.lang.String	ATTRIBUTE_COORDINATE_Y	"y"
public static final java.lang.String	ATTRIBUTE_HEIGHT	"height"
public static final java.lang.String	ATTRIBUTE_LABEL	"label"
public static final java.lang.String	ATTRIBUTE_LENGTH	"length"
public static final java.lang.String	ATTRIBUTE_VISIBLE	"visible"
public static final java.lang.String	BENCHMARK_LOGGER_NAME	"benchmark"
public static final java.lang.String	DATA_SOURCE	"datasource"
public static final java.lang.String	LOGGER_NAME	"hierarchView"
public static final java.lang.String	MAPPING_FILE	"mappingfile"
public static final java.lang.String	PROPERTY_FILE	"/config/Graph.properties"
public static final java.lang.String	USER_KEY	"user"

uk.ac.ebi.intact.application.hierarchView.business.graph.InteractionNetwork

public static final int

DEFAULT_MAX_CENTRAL_PROTEIN

7

uk.ac.ebi.intact.application.hierarchView.struts.StrutsConstants

public static final int	ADD_INTERACTION_NETWORK	1
public static final java.lang.String	ATTRIBUTE_KEY_CLICKED	"clicked"
public static final java.lang.String	ATTRIBUTE_KEYS_LIST	"keys"
public static final java.lang.String	ATTRIBUTE_SOURCE_URL	"url"
public static final int	CREATE_INTERACTION_NETWORK	0
public static final java.lang.String	GRAPH_PROPERTY_FILE	"/config/Graph.properties"
public static final java.lang.String	GRAPH2MIF_PROPERTY_FILE	"/config/graph2mif.properties"
public static final java.lang.String	HIGHLIGHTING_PROPERTY_FILE	"/config/Highlighting.properties"
public static final java.lang.String	HOST	"intact.hierarchView.host"
public static final java.lang.String	PROTOCOL	"intact.hierarchView.protocol"
public static final java.lang.String	SEARCH_PROPERTY_FILE	"/config/Search.properties"
public static final int	UPDATE_INTERACTION_NETWORK	2
public static final java.lang.String	WEB_SERVICE_PROPERTY_FILE	"/config/WebService.properties"

uk.ac.ebi.intact.application.hierarchView.struts.framework.IntactBaseAction

public static final java.lang.String	INTACT_ERROR	"IntactError"
public static final java.lang.String	INTACT_MESSAGE	"IntactMessage"

uk.ac.ebi.intact.application.hierarchView.struts.framework.IntactBaseForm

public static final java.lang.String	INTACT_ERROR	"IntactError"
public static final java.lang.String	INTACT_MESSAGE	"IntactMessage"

uk.ac.ebi.intact.application.intSeq.business.Constants

public static final java.lang.String	INTSEQ_PROPERTIES	"/config/intSeq.properties"
public static final java.lang.String	LOGGER_NAME	"intSeq"

uk.ac.ebi.intact.application.intSeq.struts.framework.IntactBaseAction

public static final java.lang.String

INTACT_ERROR

"IntactError"

uk.ac.ebi.intact.application.predict.business.PredictUser

public static final java.lang.String

SELECTED_SPECIE

"mouse"

uk.ac.ebi.intact.application.predict.struts.framework.AbstractPredictAction

protected static final java.lang.String	FAILURE	"failure"
protected static final java.lang.String	SUCCESS	"success"

uk.ac.ebi.intact.application.search2.business.Constants

public static final java.lang.String	LOGGER_NAME	"search"
public static final int	MAX_CHUNK_SIZE	20
public static final int	NO_CHUNK_SELECTED	-1

uk.ac.ebi.intact.application.search2.struts.controller.SearchAction

public static final int	MAXIMUM_DISPLAYABLE_INTERACTION	50
public static final int	MAXIMUM_DISPLAYABLE_PROTEIN	30

uk.ac.ebi.intact.application.search2.struts.framework.IntactBaseAction

public static final java.lang.String

INTACT_ERROR

"IntactError"

uk.ac.ebi.intact.application.search2.struts.view.html.HtmlBuilder

public static final int

MAX_CHUNK_IN_INDEX

20

uk.ac.ebi.intact.application.statisticView.business.Constants

public static final java.lang.String

LOGGER_NAME

"stat"

uk.ac.ebi.intact.application.statisticView.business.graphic.ChartBuilder

public static final int	ALL_INTERACTIONS_DATA	1
public static final int	BINARY_INTERACTIONS_DATA	4
public static final int	EXPERIMENT_DATA	2
public static final int	PROTEIN_DATA	0
public static final int	TERM_DATA	3

uk.ac.ebi.intact.application.synchron.XmlDumper

public static final java.lang.String	MappingFile	"config/dbIoMapping.xml"
public static final java.lang.String	RepositoryFile	"config/repository.xml"

uk.ac.ebi.intact.application.synchron.XmlLoader

public static final java.lang.String

MappingFile

"dbIoMapping.xml"

uk.ac.ebi.intact.business.BusinessConstants

public static final int	EXPANSION_ALL	0
public static final int	EXPANSION_BAITPREY	1
public static final int	JDBC_TX	0
public static final java.lang.String	MAPPING_FILE_KEY	"mappingfile"
public static final int	OBJECT_TX	1

uk.ac.ebi.intact.model.Constants

public static final java.lang.String	ATTRIBUTE_NAME	"name"
public static final java.lang.String	ATTRIBUTE_OBJECTTYPE	"objectType"
public static final java.lang.String	ATTRIBUTE_SEARCH	"search"
public static final java.lang.String	CLASS_INFO	"classInfo"
public static final java.lang.String	DATASOURCE	"datasource"
public static final java.lang.String	DB_FILE_KEY	"dbfile"
public static final java.lang.String	DB_NAME_KEY	"dbname"
public static final int	EXPANSION_ALL	0
public static final int	EXPANSION_BAITPREY	1
public static final java.lang.String	FIND_MORE_DETAILS	"detailedSearch"
public static final java.lang.String	FORWARD_DETAIL	"showDetail"
public static final java.lang.String	FORWARD_FAILURE	"failure"
public static final java.lang.String	FORWARD_NO_MATCHES	"noMatch"
public static final java.lang.String	FORWARD_SUCCESS	"success"
public static final java.lang.String	INTACT_HELPER	"intacthelper"
public static final java.lang.String	INTACT_LOG_FILE	"logfile"
public static final java.lang.String	INTACT_TYPES_FILE	"intacttypesfile"
public static final java.lang.String	JDO	"jdo"
public static final java.lang.String	MAPPING_FILE_KEY	"mappingfile"
public static final java.lang.String	PARAMETER_SEARCH_AC	"searchAc"
public static final java.lang.String	PARAMETER_SEARCH_NAME	"searchName"
public static final java.lang.String	SEARCH_BY_AC	"ac"
public static final java.lang.String	SEARCH_BY_NAME	"name"
public static final java.lang.String	SEARCH_DETAIL	"detail"
public static final java.lang.String	SEARCH_PARAM	"searchParam"
public static final java.lang.String	SEARCH_VALUE	"searchValue"
public static final java.lang.String	TYPE_MAP	"types"
public static final java.lang.String	USER_KEY	"user"

uk.ac.ebi.intact.persistence.AbstractSequenceManager

public static final java.lang.String

CONFIG_FILE

"/config/Institution.properties"

uk.ac.ebi.intact.persistence.ObjectBridgeDAO

public static final java.lang.String

OJB_LOGGER_NAME

"ojb"

uk.ac.ebi.intact.persistence.ObjectBridgeDAOSource

public static final java.lang.String

OJB_LOGGER_NAME

"ojb"

uk.ac.ebi.intact.util.GoServerProxy

public static final java.lang.String	DEFAULT_EGO_URL	"http://www.ebi.ac.uk/ego/DisplayGoTerm"
public static final java.lang.String	EGO_QUERY	"?id=${GO_ID}&intact=xml"
public static final java.lang.String	GOID_FLAG	"${GO_ID}"

uk.ac.ebi.intact.util.HttpProxyManager

public static final java.lang.String

PROXY_PROPERTIES_FILE

"/config/proxy.properties"

uk.ac.ebi.intact.util.InsertComplexGiot

public static final java.lang.String	ANNOTATION_cDNA	"Region of the cDNA involved in the interaction was: "
public static final java.lang.String	ANNOTATION_cDNA_BAIT_3_UTR	"Region of the cDNA involved in the interaction was: bait3UTR"
public static final java.lang.String	ANNOTATION_cDNA_BAIT_5_UTR	"Region of the cDNA involved in the interaction was: bait5UTR"
public static final java.lang.String	ANNOTATION_cDNA_PREY_3_UTR	"Region of the cDNA involved in the interaction was: prey3UTR"
public static final java.lang.String	ANNOTATION_cDNA_PREY_5_UTR	"Region of the cDNA involved in the interaction was: prey5UTR"
public static final java.lang.String	ANNOTATION_CONFIDENCE	"Author confidence score for the interaction was: "
public static final java.lang.String	ANNOTATION_NEED_TO_BE_REVISITED	"Revisit when UniProt demerges."
public static final java.lang.String	ANNOTATION_ORIENTATION	"Interaction observed in both orientations prey to bait and bait to prey for the two proteins."

uk.ac.ebi.intact.util.InsertGo

public static final int

MAX_ID_LEN

30

uk.ac.ebi.intact.util.NewtServerProxy

public static final int

MAX_CACHED_ITEM

200

uk.ac.ebi.intact.util.StatisticsDataSet

public static final long	DATA_NOT_LOADED	-1l
public static final long	MAXIMUM_DATA_AVAILABILITY	86400000l
public static final long	NONE	-1l

uk.ac.ebi.intact.util.XmlBuilder

public static final int	CONTRACT_NODES	2
public static final int	EXPAND_NODES	1

uk.ac.ebi.intact.util.fileParsing.beans.GiotLineBean

public static final int	BI_DIRECTIONAL_ORIENTATION	2
public static final int	MONO_DIRECTIONAL_ORIENTATION	1
public static final int	NO_ORIENTATION	0