Hierarchy For All Packages

Package Hierarchies:

uk.ac.ebi.html, uk.ac.ebi.intact.application.commons.business, uk.ac.ebi.intact.application.commons.exception, uk.ac.ebi.intact.application.commons.search, uk.ac.ebi.intact.application.commons.struts.taglibs, uk.ac.ebi.intact.application.commons.util, uk.ac.ebi.intact.application.dataConversion, uk.ac.ebi.intact.application.editor.business, uk.ac.ebi.intact.application.editor.exception, uk.ac.ebi.intact.application.editor.exception.validation, uk.ac.ebi.intact.application.editor.struts.action, uk.ac.ebi.intact.application.editor.struts.action.biosrc, uk.ac.ebi.intact.application.editor.struts.action.experiment, uk.ac.ebi.intact.application.editor.struts.action.interaction, uk.ac.ebi.intact.application.editor.struts.action.util, uk.ac.ebi.intact.application.editor.struts.framework, uk.ac.ebi.intact.application.editor.struts.framework.util, uk.ac.ebi.intact.application.editor.struts.security, uk.ac.ebi.intact.application.editor.struts.view, uk.ac.ebi.intact.application.editor.struts.view.biosrc, uk.ac.ebi.intact.application.editor.struts.view.cv, uk.ac.ebi.intact.application.editor.struts.view.experiment, uk.ac.ebi.intact.application.editor.struts.view.interaction, uk.ac.ebi.intact.application.editor.util, uk.ac.ebi.intact.application.goDensity.business.binaryInteractions, uk.ac.ebi.intact.application.goDensity.business.dag, uk.ac.ebi.intact.application.goDensity.business.data, uk.ac.ebi.intact.application.goDensity.business.image, uk.ac.ebi.intact.application.goDensity.exception, uk.ac.ebi.intact.application.goDensity.setupGoDensity, uk.ac.ebi.intact.application.goDensity.struts.business, uk.ac.ebi.intact.application.goDensity.struts.controller, uk.ac.ebi.intact.application.goDensity.struts.view, uk.ac.ebi.intact.application.graph2MIF, uk.ac.ebi.intact.application.graph2MIF.client, uk.ac.ebi.intact.application.graph2MIF.conversion, uk.ac.ebi.intact.application.graph2MIF.exception, uk.ac.ebi.intact.application.hierarchView.business, uk.ac.ebi.intact.application.hierarchView.business.graph, uk.ac.ebi.intact.application.hierarchView.business.image, uk.ac.ebi.intact.application.hierarchView.business.servlet, uk.ac.ebi.intact.application.hierarchView.business.tulip, uk.ac.ebi.intact.application.hierarchView.business.tulip.client, uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated, uk.ac.ebi.intact.application.hierarchView.business.tulip.webService, uk.ac.ebi.intact.application.hierarchView.exception, uk.ac.ebi.intact.application.hierarchView.highlightment, uk.ac.ebi.intact.application.hierarchView.highlightment.behaviour, uk.ac.ebi.intact.application.hierarchView.highlightment.source, uk.ac.ebi.intact.application.hierarchView.struts, uk.ac.ebi.intact.application.hierarchView.struts.controller, uk.ac.ebi.intact.application.hierarchView.struts.framework, uk.ac.ebi.intact.application.hierarchView.struts.taglibs, uk.ac.ebi.intact.application.hierarchView.struts.view, uk.ac.ebi.intact.application.hierarchView.struts.view.utils, uk.ac.ebi.intact.application.intSeq.business, uk.ac.ebi.intact.application.intSeq.exception, uk.ac.ebi.intact.application.intSeq.struts.controller, uk.ac.ebi.intact.application.intSeq.struts.framework, uk.ac.ebi.intact.application.intSeq.struts.view, uk.ac.ebi.intact.application.intSeq.struts.view.utils, uk.ac.ebi.intact.application.predict.business, uk.ac.ebi.intact.application.predict.struts.action, uk.ac.ebi.intact.application.predict.struts.framework, uk.ac.ebi.intact.application.predict.struts.view, uk.ac.ebi.intact.application.predict.util, uk.ac.ebi.intact.application.search2.business, uk.ac.ebi.intact.application.search2.struts.controller, uk.ac.ebi.intact.application.search2.struts.framework, uk.ac.ebi.intact.application.search2.struts.framework.util, uk.ac.ebi.intact.application.search2.struts.view, uk.ac.ebi.intact.application.search2.struts.view.details, uk.ac.ebi.intact.application.search2.struts.view.html, uk.ac.ebi.intact.application.search2.struts.view.single, uk.ac.ebi.intact.application.search2.struts.view.single.chunked, uk.ac.ebi.intact.application.statisticView.business, uk.ac.ebi.intact.application.statisticView.business.data, uk.ac.ebi.intact.application.statisticView.business.graphic, uk.ac.ebi.intact.application.statisticView.struts.controller, uk.ac.ebi.intact.application.statisticView.struts.view, uk.ac.ebi.intact.application.synchron, uk.ac.ebi.intact.business, uk.ac.ebi.intact.model, uk.ac.ebi.intact.model.proxy, uk.ac.ebi.intact.persistence, uk.ac.ebi.intact.simpleGraph, uk.ac.ebi.intact.util, uk.ac.ebi.intact.util.fileParsing, uk.ac.ebi.intact.util.fileParsing.beans, uk.ac.ebi.intact.util.logging

Class Hierarchy

• class java.lang.Object
  • class uk.ac.ebi.intact.application.editor.struts.view.AbstractEditBean (implements java.io.Serializable)
    • class uk.ac.ebi.intact.application.editor.struts.view.AbstractEditKeyBean
      • class uk.ac.ebi.intact.application.editor.struts.view.CommentBean
      • class uk.ac.ebi.intact.application.editor.struts.view.XreferenceBean
    • class uk.ac.ebi.intact.application.editor.struts.view.interaction.ExperimentBean (implements java.io.Serializable)
    • class uk.ac.ebi.intact.application.editor.struts.view.interaction.ProteinBean (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.editor.struts.framework.util.AbstractEditViewBean (implements java.io.Serializable)
    • class uk.ac.ebi.intact.application.editor.struts.view.biosrc.BioSourceViewBean
    • class uk.ac.ebi.intact.application.editor.struts.view.cv.CvViewBean
    • class uk.ac.ebi.intact.application.editor.struts.view.experiment.ExperimentViewBean
    • class uk.ac.ebi.intact.application.editor.struts.view.interaction.InteractionViewBean
  • class java.util.AbstractMap (implements java.util.Map)
    • class java.util.HashMap (implements java.lang.Cloneable, java.util.Map, java.io.Serializable)
      • class uk.ac.ebi.intact.simpleGraph.BasicGraph (implements uk.ac.ebi.intact.simpleGraph.BasicGraphI)
        • class uk.ac.ebi.intact.simpleGraph.Edge (implements uk.ac.ebi.intact.simpleGraph.EdgeI)
        • class uk.ac.ebi.intact.simpleGraph.Graph (implements uk.ac.ebi.intact.simpleGraph.GraphI)
          • class uk.ac.ebi.intact.application.graph2MIF.conversion.FusionableGraph
          • class uk.ac.ebi.intact.application.hierarchView.business.graph.InteractionNetwork
        • class uk.ac.ebi.intact.simpleGraph.Node (implements uk.ac.ebi.intact.simpleGraph.NodeI)
  • class uk.ac.ebi.intact.persistence.AbstractSequenceManager (implements org.apache.ojb.broker.util.sequence.SequenceManager)
    • class uk.ac.ebi.intact.persistence.OracleSequenceManager
    • class uk.ac.ebi.intact.persistence.PostgresSequenceManager
  • class uk.ac.ebi.intact.application.search2.struts.view.AbstractViewBean (implements java.io.Serializable)
    • class uk.ac.ebi.intact.application.search2.struts.view.details.DetailsViewBean (implements java.io.Serializable)
      • class uk.ac.ebi.intact.application.search2.struts.view.details.BinaryDetailsViewBean
      • class uk.ac.ebi.intact.application.search2.struts.view.details.InteractionDetailsViewBean
      • class uk.ac.ebi.intact.application.search2.struts.view.details.ProteinDetailsViewBean
    • class uk.ac.ebi.intact.application.search2.struts.view.single.SingleViewBean (implements java.io.Serializable)
      • class uk.ac.ebi.intact.application.search2.struts.view.single.chunked.ChunkedSingleViewBean
        • class uk.ac.ebi.intact.application.search2.struts.view.single.chunked.ExperimentChunkedSingleViewBean
      • class uk.ac.ebi.intact.application.search2.struts.view.single.ExperimentSingleViewBean
      • class uk.ac.ebi.intact.application.search2.struts.view.single.InteractionSingleViewBean
      • class uk.ac.ebi.intact.application.search2.struts.view.single.ProteinSingleViewBean
  • class org.apache.struts.action.Action
    • class uk.ac.ebi.intact.application.editor.struts.framework.AbstractEditorAction (implements uk.ac.ebi.intact.application.editor.struts.framework.util.ForwardConstants)
      • class uk.ac.ebi.intact.application.editor.struts.action.AnnotationDispatchAction
      • class uk.ac.ebi.intact.application.editor.struts.action.CancelFormAction
      • class uk.ac.ebi.intact.application.editor.struts.action.DeleteFormAction
      • class uk.ac.ebi.intact.application.editor.struts.action.EditorChoiceAction
      • class uk.ac.ebi.intact.application.editor.struts.action.interaction.ExperimentAction
      • class uk.ac.ebi.intact.application.editor.struts.action.interaction.ExperimentHoldAction
      • class uk.ac.ebi.intact.application.editor.struts.action.FillCvFormAction
        • class uk.ac.ebi.intact.application.editor.struts.action.biosrc.FillBioSrcFormAction
        • class uk.ac.ebi.intact.application.editor.struts.action.experiment.FillExperimentFormAction
        • class uk.ac.ebi.intact.application.editor.struts.action.interaction.FillInteractionFormAction
      • class uk.ac.ebi.intact.application.editor.struts.action.FillResultFormAction
      • class uk.ac.ebi.intact.application.editor.struts.action.experiment.InteractionAction
      • class uk.ac.ebi.intact.application.editor.struts.action.experiment.InteractionHoldAction
      • class uk.ac.ebi.intact.application.editor.struts.security.LoginAction
      • class uk.ac.ebi.intact.application.editor.struts.security.LogoutAction
      • class uk.ac.ebi.intact.application.editor.struts.action.interaction.ProteinDispatchAction
      • class uk.ac.ebi.intact.application.editor.struts.action.interaction.ProteinSearchAction
      • class uk.ac.ebi.intact.application.editor.struts.action.ResultAction
      • class uk.ac.ebi.intact.application.editor.struts.action.SubmitFormAction
        • class uk.ac.ebi.intact.application.editor.struts.action.biosrc.BioSourceAction
        • class uk.ac.ebi.intact.application.editor.struts.action.biosrc.BioSourceSubmitAction
        • class uk.ac.ebi.intact.application.editor.struts.action.experiment.ExperimentSubmitAction
        • class uk.ac.ebi.intact.application.editor.struts.action.interaction.InteractionSubmitAction
      • class uk.ac.ebi.intact.application.editor.struts.action.XrefDispatchAction
    • class uk.ac.ebi.intact.application.predict.struts.framework.AbstractPredictAction
      • class uk.ac.ebi.intact.application.predict.struts.action.PredictionAction
      • class uk.ac.ebi.intact.application.predict.struts.action.WelcomeAction
    • class uk.ac.ebi.intact.application.goDensity.struts.controller.ColorAction
    • class org.apache.struts.actions.DispatchAction
      • class org.apache.struts.actions.LookupDispatchAction
        • class uk.ac.ebi.intact.application.editor.struts.framework.AbstractEditorDispatchAction (implements uk.ac.ebi.intact.application.editor.struts.framework.util.ForwardConstants)
          • class uk.ac.ebi.intact.application.editor.struts.action.interaction.ExperimentDispatchAction
          • class uk.ac.ebi.intact.application.editor.struts.action.experiment.InteractionDispatchAction
          • class uk.ac.ebi.intact.application.editor.struts.action.SidebarDispatchAction
          • class uk.ac.ebi.intact.application.editor.struts.action.SubmitDispatchAction
            • class uk.ac.ebi.intact.application.editor.struts.action.experiment.InteractionLinkAction
            • class uk.ac.ebi.intact.application.editor.struts.action.interaction.SubmitAction
    • class uk.ac.ebi.intact.application.statisticView.struts.controller.FilterAction
    • class uk.ac.ebi.intact.application.goDensity.struts.controller.goChildrenAction
    • class uk.ac.ebi.intact.application.goDensity.struts.controller.goInputAction
    • class uk.ac.ebi.intact.application.goDensity.struts.controller.InitAction
    • class uk.ac.ebi.intact.application.hierarchView.struts.framework.IntactBaseAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.ClickAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.ClickBehaviourAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.DisplayAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.DisplaySourceAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.HighlightmentAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.InitAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.InteractionNetworkAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.SearchAction
      • class uk.ac.ebi.intact.application.hierarchView.struts.controller.SourceAction
    • class uk.ac.ebi.intact.application.intSeq.struts.framework.IntactBaseAction
      • class uk.ac.ebi.intact.application.intSeq.struts.controller.AccessionSimilarityAction
      • class uk.ac.ebi.intact.application.intSeq.struts.controller.ProteinSearchAction
      • class uk.ac.ebi.intact.application.intSeq.struts.controller.SequenceSimilarityAction
    • class uk.ac.ebi.intact.application.search2.struts.framework.IntactBaseAction
      • class uk.ac.ebi.intact.application.search2.struts.controller.AbstractResulltAction
        • class uk.ac.ebi.intact.application.search2.struts.controller.BinaryResultAction
        • class uk.ac.ebi.intact.application.search2.struts.controller.DetailsResultAction
        • class uk.ac.ebi.intact.application.search2.struts.controller.SingleResultAction
      • class uk.ac.ebi.intact.application.search2.struts.controller.DispatcherAction
      • class uk.ac.ebi.intact.application.search2.struts.controller.SearchAction
      • class uk.ac.ebi.intact.application.search2.struts.controller.WelcomeAction
    • class org.apache.struts.tiles.actions.TilesAction
      • class uk.ac.ebi.intact.application.editor.struts.action.util.EditorSwitchAction
      • class uk.ac.ebi.intact.application.editor.struts.action.util.HeaderSwitchAction
  • class org.apache.struts.action.ActionForm (implements java.io.Serializable)
    • class org.apache.struts.action.DynaActionForm (implements org.apache.commons.beanutils.DynaBean)
      • class org.apache.struts.validator.DynaValidatorForm (implements org.apache.commons.beanutils.DynaBean, java.io.Serializable)
        • class uk.ac.ebi.intact.application.editor.struts.view.cv.CvDynaForm
          • class uk.ac.ebi.intact.application.editor.struts.view.experiment.ExperimentDynaForm
          • class uk.ac.ebi.intact.application.editor.struts.view.interaction.InteractionDynaForm
        • class uk.ac.ebi.intact.application.editor.struts.view.interaction.ProteinSearchDynaForm
    • class uk.ac.ebi.intact.application.statisticView.struts.view.FilterForm
    • class uk.ac.ebi.intact.application.goDensity.struts.view.goInputForm
    • class uk.ac.ebi.intact.application.hierarchView.struts.framework.IntactBaseForm
      • class uk.ac.ebi.intact.application.hierarchView.struts.view.ClickBehaviourForm
      • class uk.ac.ebi.intact.application.hierarchView.struts.view.HighlightmentForm
      • class uk.ac.ebi.intact.application.hierarchView.struts.view.InitForm
      • class uk.ac.ebi.intact.application.hierarchView.struts.view.InteractionNetworkForm
      • class uk.ac.ebi.intact.application.hierarchView.struts.view.SearchForm
    • class uk.ac.ebi.intact.application.intSeq.struts.view.ProteinSearchForm
    • class uk.ac.ebi.intact.application.intSeq.struts.view.SequenceSimilarityForm
    • class uk.ac.ebi.intact.application.search2.struts.view.WelcomeForm
  • class org.apache.log4j.AppenderSkeleton (implements org.apache.log4j.Appender, org.apache.log4j.spi.OptionHandler)
    • class org.apache.log4j.WriterAppender
      • class org.apache.log4j.FileAppender
        • class org.apache.log4j.DailyRollingFileAppender
          • class uk.ac.ebi.intact.util.logging.IntactDailyRollingFileAppender
  • class uk.ac.ebi.intact.util.fileParsing.BeanStreamReader
  • class uk.ac.ebi.intact.application.search2.struts.view.details.BinaryDetailsViewBean.BinaryData (implements java.io.Serializable)
  • class uk.ac.ebi.intact.util.BioSourceFactory
  • class uk.ac.ebi.intact.business.BusinessConstants
  • class uk.ac.ebi.intact.application.goDensity.setupGoDensity.CalcBinaryInteractions
  • class uk.ac.ebi.intact.application.intSeq.business.CallingSrs (implements uk.ac.ebi.intact.application.intSeq.business.CallingSrsIF)
  • class uk.ac.ebi.intact.application.statisticView.business.graphic.ChartBuilder
  • class uk.ac.ebi.intact.util.Chrono
  • class uk.ac.ebi.intact.application.synchron.Collector
  • class uk.ac.ebi.intact.application.goDensity.setupGoDensity.Config
  • class uk.ac.ebi.intact.application.hierarchView.business.Constants
  • class uk.ac.ebi.intact.application.intSeq.business.Constants
  • class uk.ac.ebi.intact.application.search2.business.Constants
  • class uk.ac.ebi.intact.application.statisticView.business.Constants
  • class uk.ac.ebi.intact.model.Constants
  • class uk.ac.ebi.intact.util.Crc64
  • class uk.ac.ebi.intact.application.commons.search.CriteriaBean (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.goDensity.business.dag.CvGoDag
  • class uk.ac.ebi.intact.util.DagNode
  • class uk.ac.ebi.intact.persistence.DAOFactory
  • class uk.ac.ebi.intact.application.goDensity.business.data.DbTools
  • class org.apache.taglibs.display.Decorator
    • class uk.ac.ebi.intact.application.intSeq.struts.view.utils.ProteinDecorator
    • class uk.ac.ebi.intact.application.intSeq.struts.view.utils.SimilarityDecorator
    • class uk.ac.ebi.intact.application.hierarchView.struts.view.utils.SourceDecorator
    • class org.apache.taglibs.display.TableDecorator
      • class uk.ac.ebi.intact.application.editor.struts.view.experiment.AbstractIntDisplayWrapper
        • class uk.ac.ebi.intact.application.editor.struts.view.experiment.IntDisplayWrapper
        • class uk.ac.ebi.intact.application.editor.struts.view.experiment.IntHoldDisplayWrapper
      • class uk.ac.ebi.intact.application.editor.struts.view.ResultDisplayWrapper
  • class uk.ac.ebi.intact.application.goDensity.business.image.DensityImage
  • class java.util.Dictionary
    • class java.util.Hashtable (implements java.lang.Cloneable, java.util.Map, java.io.Serializable)
      • class uk.ac.ebi.intact.application.goDensity.business.data.MyHashtable
  • class uk.ac.ebi.intact.application.statisticView.business.data.DisplayStatisticsBean
  • class uk.ac.ebi.intact.util.DocumentationIntegrityChecker
  • class uk.ac.ebi.intact.application.hierarchView.business.image.DrawGraph
  • class uk.ac.ebi.intact.application.editor.struts.framework.util.EditorMenuFactory
  • class uk.ac.ebi.intact.application.editor.business.EditorService
  • class uk.ac.ebi.intact.application.editor.struts.framework.util.EditorTopicsGenerator
  • class uk.ac.ebi.intact.application.editor.business.EditUser (implements uk.ac.ebi.intact.application.editor.business.EditUserI, javax.servlet.http.HttpSessionBindingListener)
  • class uk.ac.ebi.intact.application.editor.struts.framework.util.EditViewBeanFactory
  • class uk.ac.ebi.intact.model.Evidence
  • class org.apache.struts.action.ExceptionHandler
    • class uk.ac.ebi.intact.application.editor.struts.framework.util.EditorExceptionHandler
  • class uk.ac.ebi.intact.application.dataConversion.FileGenerator
  • class uk.ac.ebi.intact.application.statisticView.struts.view.FilterBean
  • class javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • class javax.servlet.http.HttpServlet (implements java.io.Serializable)
      • class org.apache.struts.action.ActionServlet
        • class uk.ac.ebi.intact.application.editor.struts.framework.EditorActionServlet
        • class uk.ac.ebi.intact.application.search2.struts.framework.IntactActionServlet
        • class uk.ac.ebi.intact.application.predict.struts.framework.PredictActionServlet
      • class uk.ac.ebi.intact.application.goDensity.business.image.DensityImageServlet
      • class uk.ac.ebi.intact.application.hierarchView.business.servlet.GenerateImage
      • class uk.ac.ebi.intact.application.graph2MIF.Graph2MIFWSServlet
      • class uk.ac.ebi.intact.application.goDensity.struts.business.InitFastGoDag
      • class uk.ac.ebi.intact.application.commons.util.LoggingInitServlet
      • class uk.ac.ebi.intact.application.commons.util.ResetOjbCacheServlet
  • class uk.ac.ebi.intact.util.fileParsing.beans.GiotLineBean
  • class uk.ac.ebi.intact.util.GoaTools
  • class uk.ac.ebi.intact.application.goDensity.business.data.GoFlatfile2Set
  • class uk.ac.ebi.intact.application.goDensity.business.binaryInteractions.GoGoDensity
  • class uk.ac.ebi.intact.util.GoServerProxy
  • class uk.ac.ebi.intact.util.GoServerProxy.GoHandler (implements org.xml.sax.ContentHandler)
  • class uk.ac.ebi.intact.util.GoServerProxy.GoResponse
  • class uk.ac.ebi.intact.application.goDensity.struts.business.GoTokenizer
  • class uk.ac.ebi.intact.util.GoTools
  • class uk.ac.ebi.intact.application.graph2MIF.conversion.Graph2FoldedMIF
  • class uk.ac.ebi.intact.application.graph2MIF.client.Graph2MIFConsole
  • class uk.ac.ebi.intact.application.graph2MIF.client.Graph2MIFWSClient
  • class uk.ac.ebi.intact.application.graph2MIF.Graph2MIFWSService (implements uk.ac.ebi.intact.application.graph2MIF.Graph2MIFWS)
  • class uk.ac.ebi.intact.application.graph2MIF.conversion.Graph2UnfoldedMIF
  • class uk.ac.ebi.intact.application.graph2MIF.GraphFactory
  • class uk.ac.ebi.intact.application.hierarchView.business.graph.GraphHelper
  • class uk.ac.ebi.html.Helper
  • class uk.ac.ebi.intact.application.hierarchView.highlightment.behaviour.HighlightmentBehaviour
    • class uk.ac.ebi.intact.application.hierarchView.highlightment.behaviour.ColorHighlightmentBehaviour
    • class uk.ac.ebi.intact.application.hierarchView.highlightment.behaviour.VisibleHighlightmentBehaviour
  • class uk.ac.ebi.intact.application.hierarchView.highlightment.source.HighlightmentSource
    • class uk.ac.ebi.intact.application.hierarchView.highlightment.source.GoHighlightmentSource
  • class uk.ac.ebi.intact.application.hierarchView.highlightment.HighlightProteins
  • class uk.ac.ebi.intact.application.search2.struts.view.html.HtmlBuilder
  • class uk.ac.ebi.intact.application.search2.struts.view.html.HtmlBuilderManager
  • class uk.ac.ebi.intact.util.HttpProxyManager
  • class uk.ac.ebi.intact.application.hierarchView.business.image.ImageBean (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.hierarchView.business.image.ImageDimension (implements java.io.Serializable)
  • class uk.ac.ebi.intact.util.InsertComplex
  • class uk.ac.ebi.intact.util.InsertComplexGiot
  • class uk.ac.ebi.intact.util.InsertComplexMerck
  • class uk.ac.ebi.intact.util.InsertGo
  • class uk.ac.ebi.intact.application.goDensity.setupGoDensity.InsertGoFromFlatfile
  • class uk.ac.ebi.intact.business.IntactHelper (implements java.io.Externalizable, uk.ac.ebi.intact.business.SearchI)
  • class uk.ac.ebi.intact.model.IntactObjectImpl (implements uk.ac.ebi.intact.model.IntactObject, java.io.Serializable)
    • class uk.ac.ebi.intact.model.BasicObjectImpl (implements uk.ac.ebi.intact.model.BasicObject)
      • class uk.ac.ebi.intact.model.Alias
      • class uk.ac.ebi.intact.model.AnnotatedObjectImpl (implements uk.ac.ebi.intact.model.AnnotatedObject)
        • class uk.ac.ebi.intact.model.BioSource (implements uk.ac.ebi.intact.model.Editable)
        • class uk.ac.ebi.intact.model.CvObject
          • class uk.ac.ebi.intact.model.CvAliasType (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvCellCycle
          • class uk.ac.ebi.intact.model.CvCellType (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvCompartment
          • class uk.ac.ebi.intact.model.CvComponentRole (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvDagObject
            • class uk.ac.ebi.intact.model.CvGoNode
            • class uk.ac.ebi.intact.model.CvIdentification
            • class uk.ac.ebi.intact.model.CvInteraction
            • class uk.ac.ebi.intact.model.CvInteractionType
          • class uk.ac.ebi.intact.model.CvDatabase (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvDevelopmentalStage
          • class uk.ac.ebi.intact.model.CvEvidenceType
          • class uk.ac.ebi.intact.model.CvFeatureIdentification
          • class uk.ac.ebi.intact.model.CvFeatureType
          • class uk.ac.ebi.intact.model.CvJournal
          • class uk.ac.ebi.intact.model.CvModificationType
          • class uk.ac.ebi.intact.model.CvProductRole
          • class uk.ac.ebi.intact.model.CvProteinForm
          • class uk.ac.ebi.intact.model.CvReferenceQualifier
          • class uk.ac.ebi.intact.model.CvTissue (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvTopic (implements uk.ac.ebi.intact.model.Editable)
          • class uk.ac.ebi.intact.model.CvXrefQualifier (implements uk.ac.ebi.intact.model.Editable)
        • class uk.ac.ebi.intact.model.Experiment (implements uk.ac.ebi.intact.model.Editable)
        • class uk.ac.ebi.intact.model.InteractorImpl (implements uk.ac.ebi.intact.model.Interactor)
          • class uk.ac.ebi.intact.model.Complex
          • class uk.ac.ebi.intact.model.InteractionImpl (implements uk.ac.ebi.intact.model.Editable, uk.ac.ebi.intact.model.Interaction)
          • class uk.ac.ebi.intact.model.NucleicAcid
          • class uk.ac.ebi.intact.model.ProteinImpl (implements uk.ac.ebi.intact.model.Protein)
          • class uk.ac.ebi.intact.model.SmallMolecule
      • class uk.ac.ebi.intact.model.Annotation
      • class uk.ac.ebi.intact.model.Component
      • class uk.ac.ebi.intact.model.Feature
      • class uk.ac.ebi.intact.model.IntactNode
      • class uk.ac.ebi.intact.model.Modification
      • class uk.ac.ebi.intact.model.Person
      • class uk.ac.ebi.intact.model.Product
      • class uk.ac.ebi.intact.model.Range
      • class uk.ac.ebi.intact.model.Reference
        • class uk.ac.ebi.intact.model.JournalRef
        • class uk.ac.ebi.intact.model.SubmissionRef
      • class uk.ac.ebi.intact.model.Xref
    • class uk.ac.ebi.intact.model.Institution (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.search2.business.IntactServiceImpl (implements uk.ac.ebi.intact.application.search2.business.IntactServiceIF)
  • class uk.ac.ebi.intact.util.IntactStatistics (implements java.lang.Comparable)
  • class uk.ac.ebi.intact.application.hierarchView.business.IntactUser (implements uk.ac.ebi.intact.application.hierarchView.business.IntactUserI)
  • class uk.ac.ebi.intact.application.search2.business.IntactUserImpl (implements javax.servlet.http.HttpSessionBindingListener, uk.ac.ebi.intact.application.search2.business.IntactUserIF)
  • class uk.ac.ebi.intact.util.InteractorComparator (implements java.util.Comparator)
  • class uk.ac.ebi.intact.util.Key
  • class uk.ac.ebi.intact.application.goDensity.business.data.Key2HashSet
    • class uk.ac.ebi.intact.application.goDensity.business.binaryInteractions.CalcBinInteractionData
    • class uk.ac.ebi.intact.application.goDensity.business.dag.FastGoDag
  • class uk.ac.ebi.intact.application.hierarchView.struts.view.utils.LabelValueBean
  • class uk.ac.ebi.intact.application.editor.util.LockManager
  • class uk.ac.ebi.intact.application.editor.util.LockManager.LockObject
  • class uk.ac.ebi.intact.application.intSeq.business.ManagerFiles
    • class uk.ac.ebi.intact.application.intSeq.business.ManagerFilesBlast
    • class uk.ac.ebi.intact.application.intSeq.business.ManagerFilesSrs
  • class uk.ac.ebi.intact.application.editor.util.MenuManager
  • class uk.ac.ebi.intact.util.NewtServerProxy
  • class uk.ac.ebi.intact.util.NewtServerProxy.NewtResponse
  • class uk.ac.ebi.intact.persistence.ObjectBridgeDAO (implements uk.ac.ebi.intact.persistence.DAO, java.io.Serializable)
  • class uk.ac.ebi.intact.persistence.ObjectBridgeDAOSource (implements uk.ac.ebi.intact.persistence.DAOSource, java.io.Serializable)
  • class uk.ac.ebi.intact.persistence.ObjectSearch
  • class uk.ac.ebi.intact.util.ObjectSet
  • class uk.ac.ebi.intact.application.hierarchView.struts.view.utils.OptionGenerator
  • class uk.ac.ebi.intact.application.editor.struts.framework.util.PageValueBean
  • class uk.ac.ebi.intact.application.goDensity.setupGoDensity.PrecalcGoGoDensities
  • class uk.ac.ebi.intact.application.predict.util.PredictLogger
  • class uk.ac.ebi.intact.application.predict.util.PredictOra
  • class uk.ac.ebi.intact.application.predict.util.PredictPg
  • class uk.ac.ebi.intact.application.predict.business.PredictService
  • class uk.ac.ebi.intact.application.predict.business.PredictUser (implements javax.servlet.http.HttpSessionBindingListener, uk.ac.ebi.intact.application.commons.business.IntactUserI, java.io.Serializable)
    • class uk.ac.ebi.intact.application.predict.business.PredictUserOra
    • class uk.ac.ebi.intact.application.predict.business.PredictUserPg
  • class uk.ac.ebi.intact.util.PropertyLoader
  • class uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.ProteinCoordinate (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.hierarchView.business.tulip.webService.ProteinCoordinate (implements java.io.Serializable)
  • class uk.ac.ebi.intact.util.ProteinExport
  • class uk.ac.ebi.intact.util.ProteinFastaDownload
  • class uk.ac.ebi.intact.application.dataConversion.PsiDataBuilder (implements uk.ac.ebi.intact.application.dataConversion.DataBuilder)
  • class uk.ac.ebi.intact.model.ReferenceQualifier
  • class uk.ac.ebi.intact.application.predict.struts.view.ResultBean
  • class org.apache.ojb.broker.accesslayer.RowReaderDefaultImpl (implements org.apache.ojb.broker.accesslayer.RowReader)
    • class uk.ac.ebi.intact.persistence.IntactRowReaderImpl
  • class uk.ac.ebi.intact.application.intSeq.business.RunSimilaritySearch (implements uk.ac.ebi.intact.application.intSeq.business.RunSimilaritySearchIF)
  • class uk.ac.ebi.intact.util.SanityChecker
  • class uk.ac.ebi.intact.application.commons.search.SearchHelper (implements uk.ac.ebi.intact.application.commons.search.SearchHelperI)
  • class uk.ac.ebi.intact.util.SearchReplace
  • class uk.ac.ebi.intact.model.SequenceChunk
  • class uk.ac.ebi.intact.util.fileParsing.SerializationHelper
  • class uk.ac.ebi.intact.util.Serializer
  • class org.apache.axis.client.Service (implements javax.naming.Referenceable, java.io.Serializable, javax.xml.rpc.Service)
    • class uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipAccessServiceLocator (implements uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipAccessService)
  • class uk.ac.ebi.intact.application.goDensity.setupGoDensity.SetupGoDensityTables
  • class uk.ac.ebi.intact.util.ShortLabelComparator (implements java.util.Comparator)
  • class uk.ac.ebi.intact.application.intSeq.struts.view.utils.SimilarityResultBean
  • class uk.ac.ebi.intact.application.hierarchView.struts.view.utils.SourceBean
  • class uk.ac.ebi.intact.application.intSeq.struts.view.utils.SrsResultBean
  • class uk.ac.ebi.intact.application.statisticView.business.data.StatisticsBean
  • class uk.ac.ebi.intact.util.StatisticsDataSet
  • class uk.ac.ebi.intact.application.hierarchView.struts.StrutsConstants
  • class org.apache.axis.client.Stub (implements javax.xml.rpc.Stub)
    • class uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipSoapBindingStub (implements uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipAccess)
  • class javax.servlet.jsp.tagext.TagSupport (implements javax.servlet.jsp.tagext.IterationTag, java.io.Serializable)
    • class uk.ac.ebi.intact.application.commons.struts.taglibs.ClearErrorsTag
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.DisplayHighlightOptions
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.DisplayHttpContentTag
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.DisplayInteractionNetworkTag
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.DisplaySourceTag
    • class uk.ac.ebi.intact.application.commons.struts.taglibs.DocumentationTag
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.RestoreContextFromCookieTag
    • class uk.ac.ebi.intact.application.commons.struts.taglibs.RestoreErrorsTag
    • class uk.ac.ebi.intact.application.hierarchView.struts.taglibs.SaveContextInCookieTag
    • class uk.ac.ebi.intact.application.commons.struts.taglibs.SaveErrorsTag
  • class uk.ac.ebi.intact.util.TestCaseHelper
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class uk.ac.ebi.intact.application.editor.exception.BaseException
        • class uk.ac.ebi.intact.application.editor.exception.EmptyTopicsException
        • class uk.ac.ebi.intact.application.editor.exception.SearchException
        • class uk.ac.ebi.intact.application.editor.exception.SessionExpiredException
        • class uk.ac.ebi.intact.application.editor.exception.validation.ValidationException
          • class uk.ac.ebi.intact.application.editor.exception.validation.ExperimentException
          • class uk.ac.ebi.intact.application.editor.exception.validation.InteractionException
          • class uk.ac.ebi.intact.application.editor.exception.validation.ShortLabelException
      • class uk.ac.ebi.intact.application.intSeq.exception.BlastException
      • class uk.ac.ebi.intact.persistence.CreateException
      • class uk.ac.ebi.intact.application.goDensity.exception.DatabaseEmptyException
      • class uk.ac.ebi.intact.application.dataConversion.DataConversionException
      • class uk.ac.ebi.intact.persistence.DataSourceException
      • class uk.ac.ebi.intact.application.graph2MIF.exception.ElementNotParseableException
      • class uk.ac.ebi.intact.application.goDensity.exception.GoIdNotInDagException
      • class uk.ac.ebi.intact.application.graph2MIF.exception.GraphNotConvertableException
      • class uk.ac.ebi.intact.util.HttpProxyManager.ProxyConfigurationNotFound
      • class uk.ac.ebi.intact.business.IntactException
        • class uk.ac.ebi.intact.business.DuplicateLabelException
        • class uk.ac.ebi.intact.util.GoServerProxy.GoIdNotFoundException
      • class uk.ac.ebi.intact.application.intSeq.exception.IntactSrsException
      • class uk.ac.ebi.intact.application.goDensity.exception.KeyNotFoundException
      • class uk.ac.ebi.intact.application.graph2MIF.exception.MIFSerializeException
      • class uk.ac.ebi.intact.application.hierarchView.exception.MultipleResultException
      • class uk.ac.ebi.intact.util.NewtServerProxy.TaxIdNotFoundException
      • class uk.ac.ebi.intact.application.statisticView.business.data.NoDataException
      • class uk.ac.ebi.intact.application.graph2MIF.exception.NoGraphRetrievedException
      • class uk.ac.ebi.intact.application.graph2MIF.exception.NoInteractorFoundException
      • class uk.ac.ebi.intact.application.hierarchView.exception.ProteinNotFoundException
      • class uk.ac.ebi.intact.application.goDensity.exception.SameGraphPathException
      • class uk.ac.ebi.intact.persistence.SearchException
      • class uk.ac.ebi.intact.application.commons.exception.SessionExpiredException
      • class uk.ac.ebi.intact.application.hierarchView.exception.SessionExpiredException
      • class uk.ac.ebi.intact.persistence.TransactionException
      • class uk.ac.ebi.intact.persistence.UpdateException
      • class uk.ac.ebi.intact.util.UpdateProteinsI.UpdateException
  • class uk.ac.ebi.intact.application.hierarchView.business.tulip.webService.TulipAccessImpl (implements uk.ac.ebi.intact.application.hierarchView.business.tulip.webService.TulipAccess)
  • class uk.ac.ebi.intact.application.hierarchView.business.tulip.client.TulipClient
  • class uk.ac.ebi.intact.application.goDensity.business.data.TwoMaps
  • class uk.ac.ebi.intact.util.UpdateProteinsI
    • class uk.ac.ebi.intact.util.UpdateProteins
  • class uk.ac.ebi.intact.application.hierarchView.business.image.Utilities
  • class uk.ac.ebi.intact.util.Utilities
  • class uk.ac.ebi.intact.application.search2.struts.view.ViewBeanFactory
  • class org.apache.ojb.broker.VirtualProxy (implements java.io.Serializable)
    • class uk.ac.ebi.intact.model.proxy.IntactObjectProxy (implements uk.ac.ebi.intact.model.IntactObject)
      • class uk.ac.ebi.intact.model.proxy.BasicObjectProxy (implements uk.ac.ebi.intact.model.BasicObject)
        • class uk.ac.ebi.intact.model.proxy.AnnotatedObjectProxy (implements uk.ac.ebi.intact.model.AnnotatedObject)
          • class uk.ac.ebi.intact.model.proxy.InteractorProxy (implements uk.ac.ebi.intact.model.Interactor)
            • class uk.ac.ebi.intact.model.proxy.InteractionProxy (implements uk.ac.ebi.intact.model.Interaction)
            • class uk.ac.ebi.intact.model.proxy.ProteinProxy (implements uk.ac.ebi.intact.model.Protein)
  • class uk.ac.ebi.intact.application.hierarchView.business.tulip.WebServiceManager (implements javax.servlet.ServletContextListener)
  • class uk.ac.ebi.intact.util.XmlBuilder (implements java.io.Serializable)
  • class uk.ac.ebi.intact.application.synchron.XmlDumper
  • class uk.ac.ebi.intact.application.synchron.XmlLoader
  • class uk.ac.ebi.intact.application.commons.util.XrefHelper

Interface Hierarchy

• interface uk.ac.ebi.intact.application.intSeq.business.CallingSrsIF
• interface uk.ac.ebi.intact.persistence.DAO
• interface uk.ac.ebi.intact.persistence.DAOSource
• interface uk.ac.ebi.intact.application.dataConversion.DataBuilder
• interface uk.ac.ebi.intact.model.Editable
• interface uk.ac.ebi.intact.application.editor.struts.framework.util.EditorConstants
• interface java.util.EventListener
  • interface javax.servlet.http.HttpSessionBindingListener
    • interface uk.ac.ebi.intact.application.hierarchView.business.IntactUserI (also extends uk.ac.ebi.intact.application.commons.business.IntactUserI, java.io.Serializable)
  • interface uk.ac.ebi.intact.application.hierarchView.business.IntactUserI (also extends javax.servlet.http.HttpSessionBindingListener, uk.ac.ebi.intact.application.commons.business.IntactUserI, java.io.Serializable)
• interface uk.ac.ebi.intact.application.editor.struts.framework.util.ForwardConstants
• interface uk.ac.ebi.intact.application.graph2MIF.Graph2MIFWS
• interface uk.ac.ebi.intact.model.IntactObject
  • interface uk.ac.ebi.intact.model.AnnotatedObject
    • interface uk.ac.ebi.intact.model.Interaction
    • interface uk.ac.ebi.intact.model.Interactor
      • interface uk.ac.ebi.intact.model.Interaction
      • interface uk.ac.ebi.intact.model.Protein
    • interface uk.ac.ebi.intact.model.Protein
  • interface uk.ac.ebi.intact.model.BasicObject
    • interface uk.ac.ebi.intact.model.AnnotatedObject
      • interface uk.ac.ebi.intact.model.Interaction
      • interface uk.ac.ebi.intact.model.Interactor
        • interface uk.ac.ebi.intact.model.Interaction
        • interface uk.ac.ebi.intact.model.Protein
      • interface uk.ac.ebi.intact.model.Protein
    • interface uk.ac.ebi.intact.model.Interaction
    • interface uk.ac.ebi.intact.model.Interactor
      • interface uk.ac.ebi.intact.model.Interaction
      • interface uk.ac.ebi.intact.model.Protein
    • interface uk.ac.ebi.intact.model.Protein
  • interface uk.ac.ebi.intact.model.Interaction
  • interface uk.ac.ebi.intact.model.Interactor
    • interface uk.ac.ebi.intact.model.Interaction
    • interface uk.ac.ebi.intact.model.Protein
  • interface uk.ac.ebi.intact.model.Protein
• interface uk.ac.ebi.intact.application.search2.business.IntactServiceIF
• interface uk.ac.ebi.intact.application.commons.business.IntactUserI
  • interface uk.ac.ebi.intact.application.editor.business.EditUserI (also extends java.io.Serializable)
  • interface uk.ac.ebi.intact.application.hierarchView.business.IntactUserI (also extends javax.servlet.http.HttpSessionBindingListener, java.io.Serializable)
  • interface uk.ac.ebi.intact.application.search2.business.IntactUserIF
• interface java.util.Map
  • interface uk.ac.ebi.intact.simpleGraph.BasicGraphI
    • interface uk.ac.ebi.intact.simpleGraph.EdgeI
    • interface uk.ac.ebi.intact.simpleGraph.GraphI
  • interface uk.ac.ebi.intact.simpleGraph.EdgeI
  • interface uk.ac.ebi.intact.simpleGraph.GraphI
• interface uk.ac.ebi.intact.simpleGraph.NodeI
• interface uk.ac.ebi.intact.application.predict.struts.framework.PredictConstants
• interface java.rmi.Remote
  • interface uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipAccess
• interface uk.ac.ebi.intact.application.intSeq.business.RunSimilaritySearchIF
• interface uk.ac.ebi.intact.application.search2.struts.framework.util.SearchConstants
• interface uk.ac.ebi.intact.application.commons.search.SearchHelperI
• interface uk.ac.ebi.intact.business.SearchI
• interface uk.ac.ebi.intact.application.intSeq.struts.framework.SeqIdConstants
• interface java.io.Serializable
  • interface uk.ac.ebi.intact.application.editor.business.EditUserI (also extends uk.ac.ebi.intact.application.commons.business.IntactUserI)
  • interface uk.ac.ebi.intact.application.hierarchView.business.IntactUserI (also extends javax.servlet.http.HttpSessionBindingListener, uk.ac.ebi.intact.application.commons.business.IntactUserI)
• interface javax.xml.rpc.Service
  • interface uk.ac.ebi.intact.application.hierarchView.business.tulip.client.generated.TulipAccessService
• interface uk.ac.ebi.intact.application.hierarchView.business.tulip.webService.TulipAccess