Uses of Class
uk.ac.ebi.intact.application.editor.exception.SearchException

Packages that use SearchException

uk.ac.ebi.intact.application.editor.business	The classes implementing the business logic of the CvEdit application are in this package.
uk.ac.ebi.intact.application.editor.struts.framework	This package contains common classes required for the MVC framework.
uk.ac.ebi.intact.application.editor.struts.framework.util	This package contains utility methods common for the struts framework.
uk.ac.ebi.intact.application.editor.struts.view	This package contains classes belonging to the View component of the MVC framework.
uk.ac.ebi.intact.application.editor.struts.view.biosrc
uk.ac.ebi.intact.application.editor.struts.view.cv
uk.ac.ebi.intact.application.editor.struts.view.experiment
uk.ac.ebi.intact.application.editor.struts.view.interaction

Uses of SearchException in uk.ac.ebi.intact.application.editor.business

Methods in uk.ac.ebi.intact.application.editor.business that throw SearchException

void	EditUserI.persist() Persists the object the user is editing.
java.lang.Object	EditUserI.getObjectByLabel(java.lang.String className, java.lang.String label) Return an Object by classname and shortLabel.
java.lang.Object	EditUserI.getObjectByLabel(java.lang.Class clazz, java.lang.String label) Return an Object by classname and shortLabel.
java.lang.Object	EditUserI.getObjectByAc(java.lang.Class clazz, java.lang.String ac) Return an Object by ac for given class.
java.util.Collection	EditUserI.search1(java.lang.String objectType, java.lang.String searchParam, java.lang.String searchValue) This method provides a means of searching intact objects, within the constraints provided by the parameters to the method.
java.util.Collection	EditUserI.lookup(java.lang.String className, java.lang.String value) Utility method to handle the logic for lookup, ie trying AC, label etc.
java.lang.String	EditUserI.getUniqueShortLabel(java.lang.String shortlabel) Returns a unique short label.
java.lang.String	EditUserI.getUniqueShortLabel(java.lang.String shortlabel, java.lang.String extAc) Returns a unique short label.
boolean	EditUserI.shortLabelExists(java.lang.String shortlabel) Check for duplicity of short label for the current edit object.
Annotation	EditUserI.getAnnotation(CommentBean cb) Returns an Annotation constructed from the given bean.
Xref	EditUserI.getXref(XreferenceBean xb) Returns a new instance of Xref constructed from the given bean.
void	EditUser.persist()
java.lang.Object	EditUser.getObjectByLabel(java.lang.String className, java.lang.String label)
java.lang.Object	EditUser.getObjectByLabel(java.lang.Class clazz, java.lang.String label)
java.lang.Object	EditUser.getObjectByAc(java.lang.Class clazz, java.lang.String ac)
java.util.Collection	EditUser.search1(java.lang.String objectType, java.lang.String searchParam, java.lang.String searchValue)
java.util.Collection	EditUser.lookup(java.lang.String className, java.lang.String value)
java.lang.String	EditUser.getUniqueShortLabel(java.lang.String shortlabel)
java.lang.String	EditUser.getUniqueShortLabel(java.lang.String shortlabel, java.lang.String extAc)
boolean	EditUser.shortLabelExists(java.lang.String label)
Annotation	EditUser.getAnnotation(CommentBean cb)
Xref	EditUser.getXref(XreferenceBean xb)

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.framework

Methods in uk.ac.ebi.intact.application.editor.struts.framework that throw SearchException

protected void

AbstractEditorAction.setDestinationExperiment(javax.servlet.http.HttpServletRequest request) Sets the destination experiment to edit.

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.framework.util

Methods in uk.ac.ebi.intact.application.editor.struts.framework.util that throw SearchException

java.util.List	EditorMenuFactory.getMenu(java.lang.String key, int mode) Returns a menu for given name.
java.util.List	EditorMenuFactory.getDagMenu(java.lang.String name, int mode) Returns a menu for given name without leading '.' characters.
java.util.Map	EditorMenuFactory.getInteractionMenus(int mode) Returns the menus for the Interaction editor.
void	AbstractEditViewBean.persist(EditUserI user) Persists the current state to the persistent system.
java.util.List	AbstractEditViewBean.getEditTopicMenu() Returns the topic menu for editing an existing annotation.
java.util.List	AbstractEditViewBean.getAddTopicMenu() Returns the add menu for annotations.
java.util.List	AbstractEditViewBean.getEditDatabaseMenu()
java.util.List	AbstractEditViewBean.getAddDatabaseMenu()
java.util.Map	AbstractEditViewBean.getEditXrefMenus() Returns the edit menu for xrefs.
java.util.Map	AbstractEditViewBean.getAddXrefMenus() Returns the add menu for xrefs.
java.util.Map	AbstractEditViewBean.getEditorMenus() Returns the editor specific menus.
void	AbstractEditViewBean.validate(EditUserI user) Validates the data in the view bean.
void	AbstractEditViewBean.persistOthers(EditUserI user) Persist any sub objects of the edited object.
void	AbstractEditViewBean.sanityCheck(EditUserI user) Performs sanity check on a bean.
protected abstract void	AbstractEditViewBean.updateAnnotatedObject(EditUserI user) Gathers values in the view bean and updates the existing AnnotatedObject if it exists or create a new annotated object for the view and sets the annotated object.

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.view

Methods in uk.ac.ebi.intact.application.editor.struts.view that throw SearchException

Xref	XreferenceBean.getXref(EditUserI user) Updates the internal xref with the new values from the form.
Annotation	CommentBean.getAnnotation(EditUserI user) Updates the internal annotation with the new values from the form.

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.view.biosrc

Methods in uk.ac.ebi.intact.application.editor.struts.view.biosrc that throw SearchException

protected void	BioSourceViewBean.updateAnnotatedObject(EditUserI user)
java.util.List	BioSourceViewBean.getCellTypeMenu() The cell type menu list.
java.util.List	BioSourceViewBean.getTissueMenu() The tissue menu list.

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.view.cv

Methods in uk.ac.ebi.intact.application.editor.struts.view.cv that throw SearchException

protected void

CvViewBean.updateAnnotatedObject(EditUserI user)

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.view.experiment

Methods in uk.ac.ebi.intact.application.editor.struts.view.experiment that throw SearchException

protected void	ExperimentViewBean.updateAnnotatedObject(EditUserI user)
void	ExperimentViewBean.sanityCheck(EditUserI user)
void	ExperimentViewBean.validate(EditUserI user)
java.util.List	ExperimentViewBean.getOrganismMenu() The organism menu list.
java.util.List	ExperimentViewBean.getInterMenu() The interaction menu list.
java.util.List	ExperimentViewBean.getIdentMenu() The idetification menu list.

Uses of SearchException in uk.ac.ebi.intact.application.editor.struts.view.interaction

Methods in uk.ac.ebi.intact.application.editor.struts.view.interaction that throw SearchException

Component	ProteinBean.getComponent(EditUserI user)
protected void	InteractionViewBean.updateAnnotatedObject(EditUserI user)
void	InteractionViewBean.persistOthers(EditUserI user)
void	InteractionViewBean.sanityCheck(EditUserI user)
void	InteractionViewBean.validate(EditUserI user)
java.util.List	InteractionViewBean.getOrganismMenu() The organism menu list.
java.util.List	InteractionViewBean.getInteractionTypeMenu() The interaction type menu list.
java.util.List	InteractionViewBean.getEditProteinRoleMenu() Returns the edit menu for a Protein role.
java.util.List	InteractionViewBean.getAddProteinRoleMenu() Returns the add menu for a Protein role.
java.util.List	InteractionViewBean.getAddBioSourceMenu()